API for mskcc/facets-suite
Functions to run and parse output from FACETS
| Global functions | |
|---|---|
| arm_level_changes | Man page Source code |
| calculate_fraction_cna | Man page Source code |
| calculate_hrdloh | Man page Source code |
| calculate_loh | Man page Source code |
| calculate_lst | Man page Source code |
| calculate_ntai | Man page Source code |
| ccf_annotate_maf | Man page Source code |
| ccf_annotate_maf_legacy | Source code |
| cf_plot | Man page Source code |
| check_fit | Man page Source code |
| closeup_plot | Man page Source code |
| cnlr_plot | Man page Source code |
| copy_number_scores | Man page |
| create_legacy_output | Source code |
| estimate_ccf | Source code |
| expected_mutant_copies | Source code |
| facetsSuite | Man page |
| facetsSuite-package | Man page |
| format_igv_seg | Man page Source code |
| gene_level_changes | Man page Source code |
| get_cum_chr_maploc | Source code |
| get_gene_position | Source code |
| get_sample_genome | Source code |
| icn_plot | Man page Source code |
| is_genome_doubled | Source code |
| join_segments | Source code |
| load_facets_output | Source code |
| parse_segs | Source code |
| plot_facets | Man page |
| plot_segmentation | Man page Source code |
| read_snp_matrix | Man page Source code |
| run_facets | Man page Source code |
| subset_snps | Source code |
| test_facets_output | Man page |
| test_maf | Man page |
| test_read_counts | Man page |
| valor_plot | Man page Source code |
