Files in mskcc/facets-suite
Functions to run and parse output from FACETS
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
Dockerfile
LICENSE
LICENSE.md
NAMESPACE
R/arm-level-changes.R
R/ccf-annotate-maf.R
R/check-fit.R
R/copy-number-scores.R
R/facetsSuite.R
R/format-igv-seg.R
R/gene-level-changes.R
R/plot-facets.R
R/plot-segmentation.R
R/read-snp-matrix.R
R/run-facets.R
R/sysdata.rda
R/test-data.R
README.md
annotate-maf-wrapper.R
codecov.yml
data-raw/countsMerged_mini.gz
data-raw/sysdata.R
data-raw/test-data.R
data/datalist
data/test_facets_output.rda
data/test_maf.rda
data/test_read_counts.rda
man/arm_level_changes.Rd
man/ccf_annotate_maf.Rd
man/check_fit.Rd
man/copy_number_scores.Rd
man/facetsSuite.Rd
man/format_igv_seg.Rd
man/gene_level_changes.Rd
man/plot_facets.Rd
man/plot_segmentation.Rd
man/read_snp_matrix.Rd
man/run_facets.Rd
man/test_facets_output.Rd
man/test_maf.Rd
man/test_read_counts.Rd
run-facets-wrapper.R
snp-pileup-wrapper.R
tests/testthat.R
tests/testthat/test-arm-level-changes.R
tests/testthat/test-ccf-annotate-maf.R
tests/testthat/test-check-fit.R
tests/testthat/test-copy-number-scores.R
tests/testthat/test-format-igv-seg.R
tests/testthat/test-gene-level-changes.R
tests/testthat/test-plot-facets.R
tests/testthat/test-read-snp-matrix.R
tests/testthat/test-run-facets.R
