Man pages for mskcc/facets-suite
Functions to run and parse output from FACETS
| arm_level_changes | Arm-level changes |
| ccf_annotate_maf | Estimate CCFs of somatic mutations |
| check_fit | Sample QC |
| copy_number_scores | Copy-number based scores |
| facetsSuite | 'facetsSuite' package |
| format_igv_seg | Format '.seg' file |
| gene_level_changes | Get gene-level changes in copy number from FACETS output. |
| plot_facets | Plot FACETS output |
| plot_segmentation | Plot segmentation profile |
| read_snp_matrix | Read counts file |
| run_facets | Run FACETS |
| test_facets_output | Test FACETS output |
| test_maf | Test MAF |
| test_read_counts | Test read counts |
