mskilab/fragCounter: GC mappability correction and segmentation
GC bias curve is determined by loess regression of read count by GC and mappability scores. Segmentation is done by circular binary segmentation (CBS) algorithm after getting tumor/normal ratios of corrected read counts.
Getting started
Browse package contents
Package details |
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| Bioconductor views | bioc::3.10/GenomicRanges bioc::3.10/GenomeInfoDb |
| Maintainer | |
| License | GPL-2 |
| Version | 0.0.0.9000 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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