breaks: breaks
In mskilab/gChain: R Package Providing Additional Capabilities and Speed for GenomicRanges Operations
breaks R Documentation
breaks
Description
Method to extract "breaks" from a gChain mapping genome x to y
i.e. pairs of positions that are contiguous in y but were non-contiguous in x
Returns a GRangesList in genome x containing the location of pairs of positions
that are contiguous in y that were not contiguous in x.
Breaks are only defined in one direction (ie x to y)
(if you want to do reverse then just "transpose" the chain, or use rev = TRUE)
Usage
breaks(x, ...)
mskilab/gChain documentation built on Sept. 28, 2022, 3:45 p.m.
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| breaks | R Documentation |
breaks
Description
Method to extract "breaks" from a gChain mapping genome x to y i.e. pairs of positions that are contiguous in y but were non-contiguous in x
Returns a GRangesList in genome x containing the location of pairs of positions that are contiguous in y that were not contiguous in x.
Breaks are only defined in one direction (ie x to y) (if you want to do reverse then just "transpose" the chain, or use rev = TRUE)
Usage
breaks(x, ...)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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