csDEX-package: Condition-specific differential exon expression.
In mstrazar/csDEX: Condition-specific differential exon expression.

Description Details Author(s)

More about what it does (maybe more than one line)

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csDEX (Condition-specific Differential Exon Expression) is a family of general linear models (GLMs), used to model differential splicing given a set of sequencing experiments based on RNA-seq. The methods assume tens to hundreds experimental conditions to be compared, and the result are changes in usage of splice sites that are specific to an experimental condition.

Capabilities:

handling of sequence data in form of read counts or percentages (e.g. percent-spliced in, PSI),
modelling all types of splicing events,
discovery and ranking of condition-specific changes,
parallel processing of multiple genes (groups),
time-efficient model approximation with no change in false positive rate.

Martin Strazar

Maintainer: Who to complain to <yourfault@somewhere.net>

mstrazar/csDEX documentation built on May 23, 2019, 8:16 a.m.