numeric_2_VCF: Convert numeric genotypes into BEAGLE compatible VCF format
In mtmcgowan/CropSci545:
Description
Usage
Arguments
Value
View source: R/FUNCTION_numeric_2_VCF.R
Description
Convert numeric genotypes into BEAGLE compatible VCF format
Usage
1
numeric_2_VCF(genotypes, marker_map)
Arguments
genotypes
A numeric matrix or dataframe coded as c(0,1,2). Columns = markers, rows = samples/taxa
marker_map
A dataframe with the same order as the genotypes. Column names = c("rs", chr", "position")
Value
A dataframe in VCF format with marker metadata in the first 9 columns followed by genotype calls
mtmcgowan/CropSci545 documentation built on Feb. 27, 2020, 12:43 a.m.
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Description Usage Arguments Value
View source: R/FUNCTION_numeric_2_VCF.R
Description
Convert numeric genotypes into BEAGLE compatible VCF format
Usage
1 | numeric_2_VCF(genotypes, marker_map)
|
Arguments
genotypes |
A numeric matrix or dataframe coded as c(0,1,2). Columns = markers, rows = samples/taxa |
marker_map |
A dataframe with the same order as the genotypes. Column names = c("rs", chr", "position") |
Value
A dataframe in VCF format with marker metadata in the first 9 columns followed by genotype calls
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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