Description Usage Arguments Value Examples
Import Human Cell Atlas '.mtx.zip' or '.loom' archives
1 2 3 4 5 6 7 8 9 10 | import_loom(.data, path, ..., verbose = FALSE)
import_mtxzip(
.data,
path,
...,
exdir = tempfile(),
overwrite = FALSE,
verbose = FALSE
)
|
.data |
(optional) When present, a data.frame or derived class, e.g., tibble, containing a single row, and a column specified by the 'path' argument and containing a path to a remote ('http://' or 'https://') or local '.zip' archive. '.data' can also be a 'character(1)' argument used to provide the path to the '.zip' archive directly. |
path |
character(1) the path to the remote ('http://' or 'https://') or local '.zip' archive or, when '.data' is present, the column name (default '"path"') in which the path is found. |
... |
additional arguments, not supported. |
verbose |
logical(1) report progress using 'message()'. |
exdir |
character(1) directory in which to extract .zip archive. |
overwrite |
logical(1) overwrite existing files in 'exdir'? |
'SingleCellExperiment()' representing the expreession data. Rows represent features and columns cells; counts are represented in a sparse matrix.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 | ## Not run:
loom <-
available("loom")
filter(size == min(size))
import_loom()
## End(Not run)
## Not run:
mtx <-
available("mtx.zip")
filter(size == min(size))
import_mtxzip()
## End(Not run)
|
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