load_data: load_data is used to load the fcs files from all the samples...

In mtrussart/CytofRUV: CytofRUV for analysing multiple CyTOF batches

load_data is used to load the fcs files from all the samples in the study, the metadata file containing the details of each sample and a panel file containing the details of all proteins used in the study.

Description

load_data

is used to load the fcs files from all the samples in the study, the metadata file containing the details of each sample and a panel file containing the details of all proteins used in the study.

Usage

load_data(wd_data, metadata_filename, panel_filename, cofactor = 5)

Arguments

wd_data	Path to the directory containing all raw fcs files, the metadata file and the panel file
metadata_filename	Metadata filename containing the details of each sample
panel_filename	Panel filename containing the details of each marker
cofactor	Cofactor for asinh transformation, default is 5 and set to NULL for untransformed data

Value

Datasets before normalisation

mtrussart/CytofRUV documentation built on Aug. 3, 2022, 2:28 a.m.