NEWS.md

In mturchin20/MAPITR: MArginal ePIstasis Test for Regions

Version News and Updates

Version updates will be tracked and explained here. Major updates & releases will be particularly highlighted.

MAPITR v1.1.2

Summary

• Fixed pathway naming issue in results output

Since previous version (v1.1.1)

• Better hard-coded results output so pathway names stay intact
• Also switched 'Results' output to be a data.frame and not a matrix

Notes

Next steps (if applicable)

MAPITR v1.1.1

Summary

• Further tweaks for no-OpenMP version to match CRAN specifications

Since previous version (v1.1.0)

• Included proper 'if/else' statement in .cpp to get no-OpenMP versions working

Notes

• Followed some examples from https://github.com/stephenslab/mashr to fix this on recommendation from Peter
• Used R-hub for additional test environment checks

Next steps (if applicable)

MAPITR v1.1.0

Summary

• Included no-OpenMP versions

Since previous version (v1.0.6)

• Included no-OpenMP versions of the main 'MAPITR' code
• Updated Roxygen comments, vignette, and unit tests accordingly

Notes

Next steps (if applicable)

MAPITR v1.0.6

Summary

• Edits in prep for manuscript submission

Since previous version (v1.0.5)

• Edits to DESCRIPTION, README, and vignette in prep for manuscript submission

Notes

Next steps (if applicable)

MAPITR v1.0.5

Summary

• Edits for CRAN resubmission

Since previous version (v1.0.4)

• Removed use of '.GlobalEnv' in unit tests as requested
• Made sure 'cores' is always set to 1 in vignettes and unit tests as requested
• Made a formatting edit to 'Description' field in DESCRIPTION as requested

Notes

Next steps (if applicable)

MAPITR v1.0.4

Summary

• Tweaks for CRAN resubmission

Since previous version (v1.0.3)

• Another tweak to the CRAN-specific MIT license format

Notes

Next steps (if applicable)

MAPITR v1.0.3

Summary

• Tweaks for CRAN resubmission

Since previous version (v1.0.2)

• Update MIT license format for CRAN template version

Notes

Next steps (if applicable)

MAPITR v1.0.2

Summary

• Tweaks for CRAN resubmission

Since previous version (v1.0.1)

• Made leaner version of simulated dataset for unit tests and vignette

Notes

• Updated unit tests and vignette to match new, leaner simulated dataset

Next steps (if applicable)

MAPITR v1.0.1

Summary

• Reopened functionality for covariate usage and included example in current vignette

Since previous version (v1.0.0)

• Added the Covariate option back into the MAPITR function
• Included example of Covariate option usage into vignette

Notes

Next steps (if applicable)

MAPITR v1.0.0

Summary

• First CRAN-ready release and submission

Since previous version (v0.1.5)

• Cleaned up files as needed for CRAN submission
• Cleaned up README.md

Notes

Next steps (if applicable)

MAPITR v0.1.5

Summary

• Added unit tests, Roxygen2 comments, a vignette, and a pkgdown Github page
• Got Travis-CI page going

Since previous version (v0.1.0)

• Pausing within-code data check lines for now (only covering obvious cases, and most important check -- the genotype matrix -- too time intensive as a specific, internal step for the main function)
• Finished unit tests
• Finished vignette
• Completed pkgdown + Github page setup
• Added repo to Travis-CI page
• Added 'wCovs' version

Notes

• Added Roxygen2 comments for .rda files in '/data'
• Worked through 'devtools::check()' notes, warnings, and errors
• Peter Carbonetto provided some edits that account for v0.1.2, v0.1.3, & v0.1.4 (all edits for getting last parts of Travis-CI setup working)

Next steps (if applicable)

• Add in 'with covariate' version and possible 'no OpenMP' versions

MAPITR v0.1.0

Summary

• Minimal working example now running

Since previous version (v#.#.#)

Notes

Next steps (if applicable)

• Finish off rest of wrapper functions
• Implement 'with covariate' and 'without OpenMP' options
• Build up unit tests
• Build up vignette

mturchin20/MAPITR documentation built on Sept. 27, 2020, 8:43 p.m.