R/package-tMAE.R

In mumichae/tMAE: Tests and visualizes for Mono-allelic expressed variants

#'
#' This is the import mapping for the tMAE package
#' 
#' @noRd
#' 
#' @name tMAE
#'
#' @import data.table
# #' @import tidyr
#' @importFrom dplyr left_join
#' @importFrom magrittr %>%
#' @importFrom ggplot2 ggplot geom_point theme_bw scale_y_log10 scale_x_log10 labs scale_color_manual theme aes element_blank geom_abline
#' 
#' @importFrom BiocGenerics estimateSizeFactors plotDispEsts
#' 
#' @importFrom DESeq2 normalizationFactors normalizationFactors<-
#'          sizeFactors sizeFactors<- counts counts<-
#'          DESeqDataSetFromMatrix DESeqDataSet
#'          makeExampleDESeqDataSet show fpkm fpm
#'          estimateSizeFactorsForMatrix replaceOutliers
#'          dispersions dispersions<- nbinomWaldTest results
#' @importFrom GenomicRanges GRanges
#' @importFrom S4Vectors DataFrame
#' @importFrom GenomicScores populations seqnames
#' @importFrom BiocGenerics score start pos
#' @importFrom IRanges IRanges
#' 
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