ggir_process: Run GGIR Processing

In muschellij2/SummarizedActigraphy: Coerce 'Actigraphy' to Summarized Experiments

Run GGIR Processing

Description

Run GGIR Processing

Usage

ggir_process(df, unit = "1 min", calibrate = TRUE, verbose = TRUE, ...)

Arguments

df	An object with columns 'X', 'Y', and 'Z' or an object of class 'AccData'
unit	length of time to calculate measures over. a character string specifying a time unit or a multiple of a unit to be rounded to. Valid base units are 'second', 'minute', 'hour', 'day', 'week', 'month', 'bimonth', 'quarter', 'season', 'halfyear', and 'year'. Arbitrary unique English abbreviations as in the period constructor are allowed.
calibrate	Run calibration, passed to do.calibrate in GGIR
verbose	print diagnostic messages
...	additional arguments to pass to g.shell.GGIR

Value

A list with all the output elements

Examples

## Not run: 
files = read.gt3x::gt3x_datapath(2)
path = files[1]
res = read_actigraphy(path)
res = fix_zeros(res)
out = ggir_process(res, desiredtz = "UTC")
sum_data = out$part2$IMP$metashort
m = calculate_mad(res)
m[-(1:10), c("HEADER_TIME_STAMP", "ENMO_t")]
head(sum_data, 20)
sum_data$HEADER_TIME_STAMP = lubridate::as_datetime(sum_data$timestamp)
sum_data = dplyr::left_join(sum_data, m)
cor(sum_data$ENMO, sum_data$ENMO_t)

## End(Not run)

muschellij2/SummarizedActigraphy documentation built on Aug. 12, 2024, 5:35 p.m.