get_template: Lung Template Creation

In muschellij2/lungct: Processing of Lung Computed Tomography ('CT') Scans

Description

Create a new lung template from warped images and composite transformations. If the DSC < 0.99, more iterations should be performed.

Usage

get_template(
  folder_warp,
  folder_comp,
  sides = c("right", "left"),
  gradientStep = 0.2,
  mask = TRUE,
  verbose = TRUE
)

Arguments

folder_warp	Folder path for warped images
folder_comp	Folder path for composite transformations
sides	Do both left and right or only one?
gradientStep	Gradient step size
mask	Logical statement. TRUE if template should be binary.
verbose	Print output messages

Value

New Template. Right lung = 1, left lung = 2, non-lung = 0.

muschellij2/lungct documentation built on July 13, 2020, 2:17 p.m.