Files in muschellij2/ms.lesion
Example Magnetic Resonance Imaging Data from the Multiple Sclerosis Challenge
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/all_modalities.R
R/copy_ms_data.R
R/get_ids.R
R/get_image_filenames.R
R/get_par_filenames.R
R/kirby21_demog.R
R/modality_df.R
R/ms_model.R
R/subject_id_to_visit_id.R
data/ms_model.rda
inst/CITATION
inst/extdata/OBSOLETE_normalize_data.R
inst/extdata/README.txt
inst/extdata/Training_data_description.pdf
inst/extdata/coregistered/test01/brain_mask.nii.gz
inst/extdata/coregistered/test01/test01_01_flair.nii.gz
inst/extdata/coregistered/test01/test01_01_mask.nii.gz
inst/extdata/coregistered/test01/test01_01_t1.nii.gz
inst/extdata/coregistered/test01/test01_01_t1_CSF.nii.gz
inst/extdata/coregistered/test01/test01_01_t1_FAST.nii.gz
inst/extdata/coregistered/test01/test01_01_t1_GM.nii.gz
inst/extdata/coregistered/test01/test01_01_t1_Tissue_Classes.nii.gz
inst/extdata/coregistered/test01/test01_01_t1_WM.nii.gz
inst/extdata/coregistered/test01/test01_01_t1_cortthick.nii.gz
inst/extdata/coregistered/test01/test01_01_t2.nii.gz
inst/extdata/coregistered/test01/test01_Default_OASIS.nii.gz
inst/extdata/coregistered/test01/test01_Trained_OASIS.nii.gz
inst/extdata/coregistered/test02/brain_mask.nii.gz
inst/extdata/coregistered/test02/test02_01_flair.nii.gz
inst/extdata/coregistered/test02/test02_01_mask.nii.gz
inst/extdata/coregistered/test02/test02_01_t1.nii.gz
inst/extdata/coregistered/test02/test02_01_t1_CSF.nii.gz
inst/extdata/coregistered/test02/test02_01_t1_FAST.nii.gz
inst/extdata/coregistered/test02/test02_01_t1_GM.nii.gz
inst/extdata/coregistered/test02/test02_01_t1_Tissue_Classes.nii.gz
inst/extdata/coregistered/test02/test02_01_t1_WM.nii.gz
inst/extdata/coregistered/test02/test02_01_t1_cortthick.nii.gz
inst/extdata/coregistered/test02/test02_01_t2.nii.gz
inst/extdata/coregistered/test02/test02_Default_OASIS.nii.gz
inst/extdata/coregistered/test02/test02_Trained_OASIS.nii.gz
inst/extdata/coregistered/test03/brain_mask.nii.gz
inst/extdata/coregistered/test03/test03_01_flair.nii.gz
inst/extdata/coregistered/test03/test03_01_mask.nii.gz
inst/extdata/coregistered/test03/test03_01_t1.nii.gz
inst/extdata/coregistered/test03/test03_01_t1_CSF.nii.gz
inst/extdata/coregistered/test03/test03_01_t1_FAST.nii.gz
inst/extdata/coregistered/test03/test03_01_t1_GM.nii.gz
inst/extdata/coregistered/test03/test03_01_t1_Tissue_Classes.nii.gz
inst/extdata/coregistered/test03/test03_01_t1_WM.nii.gz
inst/extdata/coregistered/test03/test03_01_t1_cortthick.nii.gz
inst/extdata/coregistered/test03/test03_01_t2.nii.gz
inst/extdata/coregistered/test03/test03_Default_OASIS.nii.gz
inst/extdata/coregistered/test03/test03_Trained_OASIS.nii.gz
inst/extdata/coregistered/training01/brain_mask.nii.gz
inst/extdata/coregistered/training01/training01_01_flair.nii.gz
inst/extdata/coregistered/training01/training01_01_mask.nii.gz
inst/extdata/coregistered/training01/training01_01_t1.nii.gz
inst/extdata/coregistered/training01/training01_01_t1_CSF.nii.gz
inst/extdata/coregistered/training01/training01_01_t1_FAST.nii.gz
inst/extdata/coregistered/training01/training01_01_t1_GM.nii.gz
inst/extdata/coregistered/training01/training01_01_t1_Tissue_Classes.nii.gz
inst/extdata/coregistered/training01/training01_01_t1_WM.nii.gz
inst/extdata/coregistered/training01/training01_01_t1_cortthick.nii.gz
inst/extdata/coregistered/training01/training01_01_t2.nii.gz
inst/extdata/coregistered/training01/training01_Default_OASIS.nii.gz
inst/extdata/coregistered/training01/training01_Trained_OASIS.nii.gz
inst/extdata/coregistered/training02/brain_mask.nii.gz
inst/extdata/coregistered/training02/training02_01_flair.nii.gz
inst/extdata/coregistered/training02/training02_01_mask.nii.gz
inst/extdata/coregistered/training02/training02_01_t1.nii.gz
inst/extdata/coregistered/training02/training02_01_t1_CSF.nii.gz
inst/extdata/coregistered/training02/training02_01_t1_FAST.nii.gz
inst/extdata/coregistered/training02/training02_01_t1_GM.nii.gz
inst/extdata/coregistered/training02/training02_01_t1_Tissue_Classes.nii.gz
inst/extdata/coregistered/training02/training02_01_t1_WM.nii.gz
inst/extdata/coregistered/training02/training02_01_t1_cortthick.nii.gz
inst/extdata/coregistered/training02/training02_01_t2.nii.gz
inst/extdata/coregistered/training02/training02_Default_OASIS.nii.gz
inst/extdata/coregistered/training02/training02_Trained_OASIS.nii.gz
inst/extdata/coregistered/training03/brain_mask.nii.gz
inst/extdata/coregistered/training03/training03_01_flair.nii.gz
inst/extdata/coregistered/training03/training03_01_mask.nii.gz
inst/extdata/coregistered/training03/training03_01_t1.nii.gz
inst/extdata/coregistered/training03/training03_01_t1_CSF.nii.gz
inst/extdata/coregistered/training03/training03_01_t1_FAST.nii.gz
inst/extdata/coregistered/training03/training03_01_t1_GM.nii.gz
inst/extdata/coregistered/training03/training03_01_t1_Tissue_Classes.nii.gz
inst/extdata/coregistered/training03/training03_01_t1_WM.nii.gz
inst/extdata/coregistered/training03/training03_01_t1_cortthick.nii.gz
inst/extdata/coregistered/training03/training03_01_t2.nii.gz
inst/extdata/coregistered/training03/training03_Default_OASIS.nii.gz
inst/extdata/coregistered/training03/training03_Trained_OASIS.nii.gz
inst/extdata/coregistered/training04/brain_mask.nii.gz
inst/extdata/coregistered/training04/training04_01_flair.nii.gz
inst/extdata/coregistered/training04/training04_01_mask.nii.gz
inst/extdata/coregistered/training04/training04_01_t1.nii.gz
inst/extdata/coregistered/training04/training04_01_t1_CSF.nii.gz
inst/extdata/coregistered/training04/training04_01_t1_FAST.nii.gz
inst/extdata/coregistered/training04/training04_01_t1_GM.nii.gz
inst/extdata/coregistered/training04/training04_01_t1_Tissue_Classes.nii.gz
inst/extdata/coregistered/training04/training04_01_t1_WM.nii.gz
inst/extdata/coregistered/training04/training04_01_t1_cortthick.nii.gz
inst/extdata/coregistered/training04/training04_01_t2.nii.gz
inst/extdata/coregistered/training04/training04_Default_OASIS.nii.gz
inst/extdata/coregistered/training04/training04_Trained_OASIS.nii.gz
inst/extdata/coregistered/training05/brain_mask.nii.gz
inst/extdata/coregistered/training05/training05_01_flair.nii.gz
inst/extdata/coregistered/training05/training05_01_mask.nii.gz
inst/extdata/coregistered/training05/training05_01_t1.nii.gz
inst/extdata/coregistered/training05/training05_01_t1_CSF.nii.gz
inst/extdata/coregistered/training05/training05_01_t1_FAST.nii.gz
inst/extdata/coregistered/training05/training05_01_t1_GM.nii.gz
inst/extdata/coregistered/training05/training05_01_t1_Tissue_Classes.nii.gz
inst/extdata/coregistered/training05/training05_01_t1_WM.nii.gz
inst/extdata/coregistered/training05/training05_01_t1_cortthick.nii.gz
inst/extdata/coregistered/training05/training05_01_t2.nii.gz
inst/extdata/coregistered/training05/training05_Default_OASIS.nii.gz
inst/extdata/coregistered/training05/training05_Trained_OASIS.nii.gz
inst/extdata/models/ms_model.rda
inst/extdata/models/test01_oasis_df.rda
inst/extdata/models/test02_oasis_df.rda
inst/extdata/models/test03_oasis_df.rda
inst/extdata/models/training01_oasis_df.rda
inst/extdata/models/training02_oasis_df.rda
inst/extdata/models/training03_oasis_df.rda
inst/extdata/models/training04_oasis_df.rda
inst/extdata/models/training05_oasis_df.rda
inst/extdata/raw/test01/test01_01_flair.nii.gz
inst/extdata/raw/test01/test01_01_mask.nii.gz
inst/extdata/raw/test01/test01_01_t1.nii.gz
inst/extdata/raw/test01/test01_01_t2.nii.gz
inst/extdata/raw/test02/test02_01_flair.nii.gz
inst/extdata/raw/test02/test02_01_mask.nii.gz
inst/extdata/raw/test02/test02_01_t1.nii.gz
inst/extdata/raw/test02/test02_01_t2.nii.gz
inst/extdata/raw/test03/test03_01_flair.nii.gz
inst/extdata/raw/test03/test03_01_mask.nii.gz
inst/extdata/raw/test03/test03_01_t1.nii.gz
inst/extdata/raw/test03/test03_01_t2.nii.gz
inst/extdata/raw/training01/training01_01_flair.nii.gz
inst/extdata/raw/training01/training01_01_mask.nii.gz
inst/extdata/raw/training01/training01_01_t1.nii.gz
inst/extdata/raw/training01/training01_01_t2.nii.gz
inst/extdata/raw/training02/training02_01_flair.nii.gz
inst/extdata/raw/training02/training02_01_mask.nii.gz
inst/extdata/raw/training02/training02_01_t1.nii.gz
inst/extdata/raw/training02/training02_01_t2.nii.gz
inst/extdata/raw/training03/training03_01_flair.nii.gz
inst/extdata/raw/training03/training03_01_mask.nii.gz
inst/extdata/raw/training03/training03_01_t1.nii.gz
inst/extdata/raw/training03/training03_01_t2.nii.gz
inst/extdata/raw/training04/training04_01_flair.nii.gz
inst/extdata/raw/training04/training04_01_mask.nii.gz
inst/extdata/raw/training04/training04_01_t1.nii.gz
inst/extdata/raw/training04/training04_01_t2.nii.gz
inst/extdata/raw/training05/training05_01_flair.nii.gz
inst/extdata/raw/training05/training05_01_mask.nii.gz
inst/extdata/raw/training05/training05_01_t1.nii.gz
inst/extdata/raw/training05/training05_01_t2.nii.gz
inst/extdata/remove_zeros.R
inst/extdata/run_coreg.R
inst/extdata/run_cort_thickness.R
inst/extdata/run_eve_reg.R
inst/extdata/run_oasis.R
inst/extdata/run_oasis_parallel.R
inst/extdata/run_oasis_predict.R
inst/extdata/run_reverse_reg_for_masks.R
inst/extdata/run_seg_eve_space.R
man/all_modalities.Rd
man/copy_ms_data.Rd
man/get_ids.Rd
man/get_image_filenames.Rd
man/get_image_filenames_df.Rd
man/get_par_filenames.Rd
man/kirby21_demog.Rd
man/modality_df.Rd
man/ms_model.Rd
man/subject_id_to_visit_id.Rd
ms.lesion.Rproj
