Files in muschellij2/oro.nifti

Rigorous - 'NIfTI' + 'ANALYZE' + 'AFNI' : Input / Output

.Rbuildignore

.gitignore

.travis.yml

All_Generics.R

CRAN-RELEASE

CRAN-SUBMISSION

DESCRIPTION

Generic_Function.R Generic_Function_with_.R Generic_Maker.R Generic_Test_Maker.R Generic_accessor_.R Generic_analyze_accessor.R Generic_analyze_accessor_.R Generic_analyze_replacement.R Generic_analyze_replacement_.R Generic_nifti_accessor.R Generic_nifti_accessor_.R Generic_nifti_replacement.R Generic_nifti_replacement_.R Generic_replacement.R Generic_replacement_.R

LICENSE

NAMESPACE

NEWS.md R/Operators.R R/afniS4.R R/analyzeS4.R R/anlz_Operators.R R/auditTrail.R R/aux_file.R R/bitpix.R R/blend.R R/cal_img.R R/cal_max.R R/cal_min.R R/cal_units.R R/coerce.R R/compressed.R R/convert_anlz.R R/convert_nifti.R R/data_type.R R/datatype.R R/db_name.R R/descrip.R R/dim_.R R/dim_info.R R/dim_un0.R R/drop_img_dim.R R/exp_date.R R/exp_time.R R/extender.R R/extents.R R/field_skip.R R/funused1.R R/funused2.R R/funused3.R R/generated.R R/glmax.R R/glmin.R R/hist_un0.R R/hkey_un0.R R/hotmetal.R R/img_data.R R/img_length.R R/intent_code.R R/intent_name.R R/intent_p1.R R/intent_p2.R R/intent_p3.R R/is.R R/magic.R R/miscellaneous.R R/niftiImage_class.R R/niftiS4.R R/nifti_assign.R R/nii2oro.R R/omax.R R/omin.R R/onefile.R R/orient.R R/origin.R R/oro2nii.R R/patient_id.R R/pixdim.R R/plot.R R/qform_code.R R/qoffset_x.R R/qoffset_y.R R/qoffset_z.R R/quatern_b.R R/quatern_c.R R/quatern_d.R R/quaternion.R R/readS4.R R/regular.R R/remove.R R/scannum.R R/scl_inter.R R/scl_slope.R R/session_error.R R/sform_code.R R/sizeof_hdr.R R/slice.R R/slice_code.R R/slice_duration.R R/slice_end.R R/slice_overlay.R R/slice_start.R R/smax.R R/smin.R R/srow_x.R R/srow_y.R R/srow_z.R R/start_field.R R/tim_colors.R R/toffset.R R/transform.R R/unused1.R R/verified.R R/views.R R/vols_added.R R/vox_offset.R R/vox_units.R R/voxdim.R R/voxres.R R/wrappers.R R/writeS4.R R/xyzt_units.R R/zero_trans.R R/zzz.R R/zzz_niftiImage.R README.md

_pkgdown.yml

appveyor.yml

cran-comments.md

demo/00Index

demo/avg152T1.R demo/avg152T1LR.R demo/avg152T1RL.R demo/filtered_func_data.R

docs/404.html

docs/LICENSE-text.html

docs/articles/ffd.jpeg

docs/articles/ffd_design.jpeg

docs/articles/ffd_orthographic.jpeg

docs/articles/ffd_zstat1.jpeg

docs/articles/ffd_zstat2.jpeg

docs/articles/index.html

docs/articles/mniLR.jpeg

docs/articles/mniRL.jpeg

docs/articles/mniRL_orthographic.jpeg

docs/articles/nifti2.html

docs/articles/nifti2_files/accessible-code-block-0.0.1/empty-anchor.js

docs/articles/nifti2_files/header-attrs-2.0.7/header-attrs.js

docs/articles/nifti2_files/header-attrs-2.1.3/header-attrs.js

docs/articles/nifti2_files/header-attrs-2.3/header-attrs.js

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/news/index.html

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/Rplot001.png

docs/reference/Rplot002.png

docs/reference/Rplot003.png

docs/reference/Rplot004.png

docs/reference/afni-class.html

docs/reference/anlz-class.html

docs/reference/anlz-nifti-ops.html

docs/reference/anlz.html

docs/reference/as.anlz.html

docs/reference/as.nifti.html

docs/reference/audit_trail-methods.html

docs/reference/audit_trail.html

docs/reference/aux_file-methods.html

docs/reference/bitpix-methods.html

docs/reference/bitwise.html

docs/reference/blend-methods.html

docs/reference/cal_img.html

docs/reference/cal_max-methods.html

docs/reference/cal_min-methods.html

docs/reference/cal_units-methods.html

docs/reference/coerce-methods.html

docs/reference/compressed-methods.html

docs/reference/convert_afni.html

docs/reference/convert_anlz.html

docs/reference/convert_nifti.html

docs/reference/data_type-methods.html

docs/reference/datatype-methods.html

docs/reference/db_name-methods.html

docs/reference/descrip-methods.html

docs/reference/dim_-methods.html

docs/reference/dim_info-methods.html

docs/reference/dim_un0-methods.html

docs/reference/drop_img_dim.html

docs/reference/exp_date-methods.html

docs/reference/exp_time-methods.html

docs/reference/extender-methods.html

docs/reference/extents-methods.html

docs/reference/field_skip-methods.html

docs/reference/funused1-methods.html

docs/reference/funused2-methods.html

docs/reference/funused3-methods.html

docs/reference/generated-methods.html

docs/reference/glmax-methods.html

docs/reference/glmin-methods.html

docs/reference/hist_un0-methods.html

docs/reference/hkey_un0-methods.html

docs/reference/hotmetal-1.png

docs/reference/hotmetal.html

docs/reference/image-methods.html

docs/reference/img_data-methods.html

docs/reference/img_length.html

docs/reference/index.html

docs/reference/integerTranslation.html

docs/reference/intent_code-methods.html

docs/reference/intent_name-methods.html

docs/reference/intent_p1-methods.html

docs/reference/intent_p2-methods.html

docs/reference/intent_p3-methods.html

docs/reference/internalImage-class.html

docs/reference/is_afni.html

docs/reference/is_anlz.html

docs/reference/is_nifti.html

docs/reference/magic-methods.html

docs/reference/miscellaneous.html

docs/reference/nifti-class.html

docs/reference/nifti.html

docs/reference/niftiAuditTrail-class.html

docs/reference/niftiExtension-class.html

docs/reference/niftiExtensionSection-class.html

docs/reference/niftiImage-class.html

docs/reference/nifti_assign-methods.html

docs/reference/niftiops.html

docs/reference/nii2oro.html

docs/reference/omax-methods.html

docs/reference/omin-methods.html

docs/reference/onefile.html

docs/reference/orient-methods.html

docs/reference/orientation-methods.html

docs/reference/origin-methods.html

docs/reference/oro2nii.html

docs/reference/orthographic-methods-1.png

docs/reference/orthographic-methods-2.png

docs/reference/orthographic-methods-3.png

docs/reference/orthographic-methods-4.png

docs/reference/orthographic-methods.html

docs/reference/overlay-methods.html

docs/reference/patient_id-methods.html

docs/reference/performPermutation.html

docs/reference/pixdim-methods.html

docs/reference/qform_code-methods.html

docs/reference/qoffset_x-methods.html

docs/reference/qoffset_y-methods.html

docs/reference/qoffset_z-methods.html

docs/reference/quatern_b-methods.html

docs/reference/quatern_c-methods.html

docs/reference/quatern_d-methods.html

docs/reference/quaternion2rotation.html

docs/reference/read_afni.html

docs/reference/read_anlz-1.png

docs/reference/read_anlz-2.png

docs/reference/read_anlz.html

docs/reference/read_nifti-1.png

docs/reference/read_nifti-2.png

docs/reference/read_nifti.html

docs/reference/regular-methods.html

docs/reference/remove.html

docs/reference/reorient.html

docs/reference/scannum-methods.html

docs/reference/scl_inter-methods.html

docs/reference/scl_slope-methods.html

docs/reference/session_error-methods.html

docs/reference/sform_code-methods.html

docs/reference/sizeof_hdr-methods.html

docs/reference/slice-methods.html

docs/reference/slice_code-methods.html

docs/reference/slice_duration-methods.html

docs/reference/slice_end-methods.html

docs/reference/slice_overlay-methods.html

docs/reference/slice_start-methods.html

docs/reference/smax-methods.html

docs/reference/smin-methods.html

docs/reference/srow_x-methods.html

docs/reference/srow_y-methods.html

docs/reference/srow_z-methods.html

docs/reference/start_field-methods.html

docs/reference/test-anlz-image-uint8.hdr.gz

docs/reference/test-anlz-image-uint8.img.gz

docs/reference/test-nifti-image-uint8.nii.gz

docs/reference/tim_colors-1.png

docs/reference/tim_colors.html

docs/reference/toffset-methods.html

docs/reference/transformCoordinate.html

docs/reference/unused1-methods.html

docs/reference/verified-methods.html

docs/reference/views-methods.html

docs/reference/vols_added-methods.html

docs/reference/vox_offset-methods.html

docs/reference/vox_units-methods.html

docs/reference/voxdim.html

docs/reference/voxres.html

docs/reference/write_afni-methods-1.png

docs/reference/write_afni-methods-2.png

docs/reference/write_afni-methods-3.png

docs/reference/write_afni-methods.html

docs/reference/write_anlz-1.png

docs/reference/write_anlz-2.png

docs/reference/write_anlz.html

docs/reference/write_nifti-1.png

docs/reference/write_nifti-2.png

docs/reference/write_nifti.html

docs/reference/xyzt_units-methods.html

docs/reference/zero_trans.html

docs/sitemap.xml

inst/CITATION

inst/afni/ARzs_CW_avvr.DEL+orig.BRIK

inst/afni/ARzs_CW_avvr.DEL+orig.HEAD

inst/afni/TT_N27_EZ_LR+tlrc.BRIK.gz

inst/afni/TT_N27_EZ_LR+tlrc.HEAD

inst/anlz/avg152T1.hdr.gz

inst/anlz/avg152T1.img.gz

inst/nifti/filtered_func_data.nii.gz

inst/nifti/mniLR.nii.gz

inst/nifti/mniRL.nii.gz

inst/nifti/zstat1.nii.gz

man/afni-class.Rd man/anlz-class.Rd man/anlz-nifti-ops.Rd man/anlz.Rd man/as.anlz.Rd man/as.nifti.Rd man/audit_trail-methods.Rd man/audit_trail.Rd man/aux_file-methods.Rd man/bitpix-methods.Rd man/bitwise.Rd man/blend-methods.Rd man/cal_img.Rd man/cal_max-methods.Rd man/cal_min-methods.Rd man/cal_units-methods.Rd man/coerce-methods.Rd man/compressed-methods.Rd man/convert_afni.Rd man/convert_anlz.Rd man/convert_nifti.Rd man/data_type-methods.Rd man/datatype-methods.Rd man/db_name-methods.Rd man/descrip-methods.Rd man/dim_-methods.Rd man/dim_info-methods.Rd man/dim_un0-methods.Rd man/drop_img_dim.Rd man/exp_date-methods.Rd man/exp_time-methods.Rd man/extender-methods.Rd man/extents-methods.Rd man/field_skip-methods.Rd man/funused1-methods.Rd man/funused2-methods.Rd man/funused3-methods.Rd man/generated-methods.Rd man/glmax-methods.Rd man/glmin-methods.Rd man/hist_un0-methods.Rd man/hkey_un0-methods.Rd man/hotmetal.Rd man/image-methods.Rd man/img_data-methods.Rd man/img_length.Rd man/integerTranslation.Rd man/intent_code-methods.Rd man/intent_name-methods.Rd man/intent_p1-methods.Rd man/intent_p2-methods.Rd man/intent_p3-methods.Rd man/internalImage-class.Rd man/is_afni.Rd man/is_anlz.Rd man/is_nifti.Rd man/magic-methods.Rd man/miscellaneous.Rd man/nifti-class.Rd man/nifti.Rd man/niftiAuditTrail-class.Rd man/niftiExtension-class.Rd man/niftiExtensionSection-class.Rd man/niftiImage-class.Rd man/nifti_assign-methods.Rd man/niftiops.Rd man/nii2oro.Rd man/omax-methods.Rd man/omin-methods.Rd man/onefile.Rd man/orient-methods.Rd man/orientation-methods.Rd man/origin-methods.Rd man/oro2nii.Rd man/orthographic-methods.Rd man/overlay-methods.Rd man/patient_id-methods.Rd man/performPermutation.Rd man/pixdim-methods.Rd man/qform_code-methods.Rd man/qoffset_x-methods.Rd man/qoffset_y-methods.Rd man/qoffset_z-methods.Rd man/quatern_b-methods.Rd man/quatern_c-methods.Rd man/quatern_d-methods.Rd man/quaternion2rotation.Rd man/read_afni.Rd man/read_anlz.Rd man/read_nifti.Rd man/regular-methods.Rd man/remove.Rd man/reorient.Rd man/scannum-methods.Rd man/scl_inter-methods.Rd man/scl_slope-methods.Rd man/session_error-methods.Rd man/sform_code-methods.Rd man/sizeof_hdr-methods.Rd man/slice-methods.Rd man/slice_code-methods.Rd man/slice_duration-methods.Rd man/slice_end-methods.Rd man/slice_overlay-methods.Rd man/slice_start-methods.Rd man/smax-methods.Rd man/smin-methods.Rd man/srow_x-methods.Rd man/srow_y-methods.Rd man/srow_z-methods.Rd man/start_field-methods.Rd man/tim_colors.Rd man/toffset-methods.Rd man/transformCoordinate.Rd man/unused1-methods.Rd man/verified-methods.Rd man/views-methods.Rd man/vols_added-methods.Rd man/vox_offset-methods.Rd man/vox_units-methods.Rd man/voxdim.Rd man/voxres.Rd man/write_afni-methods.Rd man/write_anlz.Rd man/write_nifti.Rd man/xyzt_units-methods.Rd man/zero_trans.Rd

oro.nifti.Rproj

tests/testthat.R tests/testthat/test-plotting.R tests/testthat/test_anlz.R tests/testthat/test_nifti.R tests/testthat/test_nii2oro.R tests/testthat/test_sizeof_hdr.R tests/testthat/test_xyzt_units.R

vignettes/.gitignore

vignettes/jss.bst

vignettes/jss.cls

vignettes/jsslogo.jpg

vignettes/nifti.Rnw

vignettes/nifti.bib

vignettes/nifti.pdf vignettes/nifti2.Rmd

vignettes/nifti2.log

vignettes/nifti2.pdf

vignettes/nifti2.tex

muschellij2/oro.nifti documentation built on Nov. 28, 2023, 5:36 a.m.