makeblastdb: make blastdb

In mutolisp/seqParser: Parsing DNA sequences (seqParser)

Description

make blastdb

Usage

makeblastdb(input, dbtype, parse_seqids = TRUE, hash_index = FALSE,
  ...)

Arguments

input	input file
dbtype	database type, "nucl": nucleotide
parse_seqids	Option to parse seqid for FASTA input if set, for all other input types seqids are parsed automatically, default is TRUE
hash_index	Create index of sequence hash values, default is FALSE
...	makeblastdb arguments, available arguments are: 'gi_mask','gi_mask_name','h','help', 'input_type','logfile','mask_data','mask_desc', 'mask_id','max_file_sz','out','taxid','taxid_map', 'title','version'
input_type	Type of the data specified in input_file. Available types are ‘asn1_bin’, ‘asn1_txt’, ‘blastdb’, ‘fasta’. Default is 'fasta'

Value

None

mutolisp/seqParser documentation built on May 23, 2019, 10:52 a.m.