prediction: prediction

In mvaniterson/wbccPredictor: A gene expression or DNA methylation based predictor for white blood cell counts

Description

prediction cell percentages based on trained model

Usage

prediction(predictor, data, covariates, transformation = function(x) x,
  ncomp = NULL, impute = TRUE, ...)

Arguments

predictor	results from train
data	matrix of 450k beta values or RNAseq counts
covariates	matrix of covariates to correct for in the model e.g. Age and Gender
transformation	this will depend on the model e.g. 10^x -1 if model is log10(cellPercentages+1)~. Default is no transformation.
ncomp	optimal number of components that will be used
impute	TRUE
...	not used yet

Details

prediction cell percentages based on trained model

Value

predicted cell percentage

Author(s)

mvaniterson

mvaniterson/wbccPredictor documentation built on May 23, 2019, 10:53 a.m.