getLoadings: The getLoadings function

In mverbyla/pathogenflows: Pathogen Flows for Sanitation Systems

The getLoadings function

Description

This function predicts the pathogen loadings from onsite sanitation systems for data available through the UNICEF/WHO Joint Monitoring Program and provides an output that can be used directly by the Pathogen Mapping Tool.

Usage

getLoadings(
  inputDF = read.csv("data/input_file_new_kla_div_20200727.csv"),
  pathogenType = "Virus"
)

Arguments

inputDF	A dataframe containing your onsite sanitation data. An example template can be found at http://data.waterpathogens.org/
pathogenType	Specify either "Virus","Bacteria","Protozoa", or "Helminth"

Examples

myOutput<-getLoadings(inputDF,pathogenType="Virus")
myOutput$output

$output
     gid excreted   to_groundwater   to_surface       retained_in_soil      decayed         In_Fecal_Sludge    In_Sewage        stillViable        Onsite_LRV     Onsite_PR
1    HND 3.63e+18   5.840389e+16     1.963546e+18     5.738629e+17          5.042712e+17    1.179983e+14       5.297977e+17     2.551866e+18       0.15           0.2970
2    UGA 1.67e+19   1.565005e+17     1.731193e+18     1.408505e+18          1.340068e+19    0.000000e+00       3.127723e+15     1.890822e+18       0.95           0.8868

mverbyla/pathogenflows documentation built on Sept. 19, 2022, 10:05 p.m.