brapi_get_markerprofiles_markerProfileDbId: get /markerprofiles/{markerProfileDbId}

In mverouden/brapir: Client to Access BrAPI Compliant Plant Breeding Databases

get /markerprofiles/{markerProfileDbId}

Description

Get the details for a specific Marker Profile

Usage

brapi_get_markerprofiles_markerProfileDbId(
  con = NULL,
  markerProfileDbId = "",
  expandHomozygotes = NA,
  unknownString = "",
  sepPhased = "",
  sepUnphased = "",
  page = 0,
  pageSize = 1000
)

Arguments

con	list; required: TRUE; BrAPI connection object
markerProfileDbId	character; required: TRUE; The server's internal id for the marker profile
expandHomozygotes	logical; required: FALSE; Should homozygotes NOT be collapsed into a single orrucance?; default: NA, other possible values: TRUE | FALSE
unknownString	character; required: FALSE; The string to use as a representation for missing data or the reserved word "empty_string".
sepPhased	character; required: FALSE; The string to use as a separator for phased allele calls or the reserved word "empty_string".
sepUnphased	character; required: FALSE; The string to use as a separator for unphased allele calls or the reserved word "empty_string".
page	integer; required: FALSE; Which result page is requested. The page indexing starts at 0 (the first page is 'page'= 0). Default is 0.
pageSize	integer; required: FALSE; The size of the pages to be returned. Default is 1000.

Details

For the requested marker profile ID, returns the allele call for each marker.

Allele encodings:

• Unknown data will by default be encoded by \"N\"

• Homozygotes are returned as a single occurance, e.g. AA -> A, GG -> G

• Phased heterozygotes are by default separated by a pipe (\"|\") and unphased heterozygotes are by default separated by a forward slash (\"/\")

• Dominant markers such as DArTs: 1 for present, 0 for absent

• If the user would like to use an empty string (\"\") for any of the parameters, the value should be set to the reserved word \"empty_string\", e.g. sepUnphased = "empty_string".

Value

data.frame

Author(s)

brapir generator package

References

BrAPI SwaggerHub

See Also

Other brapi_1.3: brapi_get_allelematrices_search(), brapi_get_allelematrices(), brapi_get_attributes_categories(), brapi_get_attributes(), brapi_get_breedingmethods_breedingMethodDbId(), brapi_get_breedingmethods(), brapi_get_calls(), brapi_get_commoncropnames(), brapi_get_germplasm_germplasmDbId_attributes(), brapi_get_germplasm_germplasmDbId_markerprofiles(), brapi_get_germplasm_germplasmDbId_mcpd(), brapi_get_germplasm_germplasmDbId_pedigree(), brapi_get_germplasm_germplasmDbId_progeny(), brapi_get_germplasm_germplasmDbId(), brapi_get_germplasm(), brapi_get_images_imageDbId(), brapi_get_images(), brapi_get_lists_listDbId(), brapi_get_lists(), brapi_get_locations_locationDbId(), brapi_get_locations(), brapi_get_maps_mapDbId_positions_linkageGroupName(), brapi_get_maps_mapDbId_positions(), brapi_get_maps_mapDbId(), brapi_get_maps(), brapi_get_markerprofiles(), brapi_get_markers_markerDbId(), brapi_get_markers(), brapi_get_methods_methodDbId(), brapi_get_methods(), brapi_get_observationlevels(), brapi_get_observationunits(), brapi_get_ontologies(), brapi_get_people_personDbId(), brapi_get_people(), brapi_get_programs(), brapi_get_samples_sampleDbId(), brapi_get_samples(), brapi_get_scales_scaleDbId(), brapi_get_scales(), brapi_get_search_germplasm_searchResultsDbId(), brapi_get_search_images_searchResultsDbId(), brapi_get_search_markers_searchResultsDbId(), brapi_get_search_observationtables_searchResultsDbId(), brapi_get_search_observationunits_searchResultsDbId(), brapi_get_search_programs_searchResultsDbId(), brapi_get_search_samples_searchResultsDbId(), brapi_get_search_studies_searchResultsDbId(), brapi_get_search_variables_searchResultsDbId(), brapi_get_seasons(), brapi_get_studies_studyDbId_germplasm(), brapi_get_studies_studyDbId_layouts(), brapi_get_studies_studyDbId_observations(), brapi_get_studies_studyDbId_observationunits(), brapi_get_studies_studyDbId_observationvariables(), brapi_get_studies_studyDbId_table(), brapi_get_studies_studyDbId(), brapi_get_studies(), brapi_get_studytypes(), brapi_get_traits_traitDbId(), brapi_get_traits(), brapi_get_trials_trialDbId(), brapi_get_trials(), brapi_get_variables_observationVariableDbId(), brapi_get_variables(), brapi_get_vendor_orders_orderId_plates(), brapi_get_vendor_orders_orderId_results(), brapi_get_vendor_orders_orderId_status(), brapi_get_vendor_orders(), brapi_get_vendor_plates_submissionId(), brapi_get_vendor_specifications(), brapi_post_allelematrices_search(), brapi_post_images(), brapi_post_lists_listDbId_items(), brapi_post_lists(), brapi_post_methods(), brapi_post_people(), brapi_post_phenotypes(), brapi_post_scales(), brapi_post_search_germplasm(), brapi_post_search_images(), brapi_post_search_markers(), brapi_post_search_observationtables(), brapi_post_search_observationunits(), brapi_post_search_programs(), brapi_post_search_samples(), brapi_post_search_studies(), brapi_post_search_variables(), brapi_post_studies_studyDbId_table(), brapi_post_traits(), brapi_post_vendor_orders(), brapi_post_vendor_plates(), brapi_put_images_imageDbId_imagecontent(), brapi_put_images_imageDbId(), brapi_put_lists_listDbId(), brapi_put_methods_methodDbId(), brapi_put_people_personDbId(), brapi_put_samples(), brapi_put_scales_scaleDbId(), brapi_put_studies_studyDbId_layouts(), brapi_put_studies_studyDbId_observations(), brapi_put_studies_studyDbId_observationunits(), brapi_put_traits_traitDbId()

Other Marker Profiles: brapi_get_allelematrices_search(), brapi_get_allelematrices(), brapi_get_markerprofiles(), brapi_post_allelematrices_search()

mverouden/brapir documentation built on April 10, 2022, 5:36 p.m.