Files in mxrcx/Omicsimulator
Omicsimulator - Simulation of gene expression rates of various cancer samples

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DESCRIPTION
GDCdata/.DS_Store
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GDCdata/TCGA-SKCM/harmonized/Transcriptome_Profiling/Gene_Expression_Quantification/fd84b45c-54b1-42ee-851c-07f65fd1fa51/f3f24252-17e5-48f0-b917-88aef604d367.htseq.counts.gz
GDCdata/TCGA-SKCM/harmonized/Transcriptome_Profiling/Gene_Expression_Quantification/fe65b19b-8ec1-4cb2-b6ab-eeeda3194e66/36a3aefd-df64-41ea-a4cc-00b2dcd017c9.htseq.counts.gz
GDCdata/TCGA-SKCM/harmonized/Transcriptome_Profiling/Gene_Expression_Quantification/ff3646d7-6e8e-4452-9762-01480666f313/28aa9ed9-f094-4165-b61d-1a0936419d65.htseq.counts.gz
Human_genes__GRCh38_p12_.rda
MANIFEST.txt
NAMESPACE
R/.DS_Store
R/CheckDependencies.R R/CreateBarplot.R R/DEA.R R/GenerateMAF.R R/GetCancerProject.R R/LoadTCGAMatrix.R R/Omicsimulator.R R/SampleGeneVariations.R R/StartOmicsimulator.R R/TopDEG.R README.md
cache/.DS_Store
cache/Breast cancer/.DS_Store
cache/Breast cancer/DEA_resultsBreast cancer_description=NT_PT_sample=10.rds
cache/Breast cancer/DEA_resultsBreast cancer_description=NT_PT_sample=100.rds
cache/Breast cancer/DEA_resultsBreast cancer_description=NT_PT_sample=2.rds
cache/Breast cancer/DEA_resultsBreast cancer_description=NT_PT_sample=3.rds
cache/Breast cancer/DEA_resultsBreast cancer_description=NT_PT_sample=50.rds
cache/Breast cancer/DEA_resultsBreast cancer_description=NT_Simulated_sample=10.rds
cache/Breast cancer/DEA_resultsBreast cancer_description=NT_Simulated_sample=100.rds
cache/Breast cancer/DEA_resultsBreast cancer_description=NT_Simulated_sample=2.rds
cache/Breast cancer/DEA_resultsBreast cancer_description=NT_Simulated_sample=50.rds
cache/Breast cancer/cor_normalBreast cancer_sample=10.rds
cache/Breast cancer/cor_normalBreast cancer_sample=100.rds
cache/Breast cancer/cor_normalBreast cancer_sample=2.rds
cache/Breast cancer/cor_normalBreast cancer_sample=50.rds
cache/Breast cancer/tcga_Breast cancer_Primary solid Tumor_sample=100.rds
cache/Breast cancer/tcga_Breast cancer_Solid Tissue Normal_sample=100.rds
cache/Melanoma/DEA_resultsMelanoma_description=NT_PT_sample=50.rds
cache/Melanoma/DEA_resultsMelanoma_description=NT_Simulated_sample=50.rds
cache/Melanoma/cor_normalMelanoma_sample=50.rds
cache/Melanoma/tcga_Melanoma_Primary solid Tumor_sample=50.rds
cache/Melanoma/tcga_Melanoma_Solid Tissue Normal_sample=50.rds
cache/inputFile_influence.rds
inst/.DS_Store
inst/extdata/.DS_Store
inst/extdata/BRCA_tumor.cis_eQTL.csv
inst/extdata/BRCA_tumor.cis_eQTL.xls
inst/extdata/BRCA_tumor.trans_eQTL.csv
inst/extdata/BRCA_tumor.trans_eQTL.xls
inst/extdata/sampleVars.tsv
inst/extdata/vcf_input.vcf
man/CheckDependencies.Rd man/CreateBarplot.Rd man/DEA.Rd man/GenerateMAF.Rd man/GetCancerProject.Rd man/LoadTCGAMatrix.Rd man/Omicsimulator.Rd man/SampleGeneVariations.Rd man/TopDEG.Rd
omicsimulator2.0.Rproj
sampleVars.txt
mxrcx/Omicsimulator documentation built on Oct. 4, 2019, 3 a.m.