cac: An example file consisting of independent cases/controls

In mxw010/LBL: Logistic and Quantitative Bayesian Lasso for identifying genetic association between common diseases and rare haplotypes

Description

A dataset containing phenotypes and genotypes of 5 SNPs for 500 independent cases and controls, and is presented in a pedigree format for easier integration with family data.

Usage

data(cac)

Format

A data frame with 500 rows (250 cases and 250 controls) and 16 ( = 6 fixed columns + 2 * # of SNPs) columns:

column 1

family ID, integers

column 2

individual ID, integers

column 3

father's ID, 0 for unknown father.

column 4

mother's ID, 0 for unknown mother.

column 5

individual's sex: 1 = male and 2 = female.

column 6

affection status: 0 = unknown, 1 = unaffected, and 2 = affected.

column 7

column 8

column 9

column 10

column 11

column 12

column 13

column 14

column 15

column 16

marker genotypes. Each SNP is represented by two columns: one for each allele.

mxw010/LBL documentation built on Sept. 26, 2021, 3:44 a.m.