index_snp
to be a vector to highlight more than 1 SNP per region
(suggested by Luke Pilling).LDproxy
in link_LD()
. This is now the
default option.locus_plot()
, locus_ggplot()
, genetracks()
and
gg_genetracks()
.link_recomb()
, which is much faster when plotting multiple loci.locus_ggplot()
and gg_scatter()
(thanks to Tom Willis).link_recomb()
locus_plot()
and locus_ggplot()
.scatter_plot()
arguments chromCol
and sigCol
are replaced by scheme
which now allows setting of the index SNP colour.gg_genetracks()
to enable easy
layering of several ggplot2 plots above a row of gene tracks (thanks to nickhir
for the suggestion).data
(or setting it to NULL
) when calling
locus()
.quick_peak()
for quickly finding peaks in GWAS datasets.link_recomb()
for retrieving recombination data from UCSC.locus_plot()
and
locus_ggplot()
....
to link_LD()
and link_eqtl()
to allow passing of additional
arguments such as genome_build
to LDlinkR
queries.LDtoken
in link_LD()
and link_eqtl()
has been renamed token
to be consistent with LDlinkR
.locus_ggplot()
and
locus_plotly()
.locus_plotly()
yzero
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