relsa_plot: Plot RELSA score and variables together

In mytalbot/RELSA: Relative Severity Assessment Score

Plot RELSA score and variables together

Description

The relsa_plot function visualizes the RELSA score alone or in combination with one of the variables.

Usage

relsa_plot(
  set = NULL,
  RELSA,
  levels = NULL,
  animal = 1,
  plotvar = NULL,
  plotRELSA = TRUE,
  myylim = c(70, 110),
  myYlim = c(0, 2),
  mypch = 1,
  mycol = "red",
  myXlab = "time point"
)

Arguments

set	dataset sample data frame
RELSA	RELSA object
levels	k+1 levels from kmeans calculations (relsa_levels function)
animal	which unique animal in the set?
plotvar	which variable shall be plotted (does not scale with RELSA score)
plotRELSA	plot the RELSA score "yes/no"?
myylim	custom y-axis limits (left axis)
myYlim	custom y-axis limits (right axis)
mypch	custom dot marker
mycol	custom plot color
myXlab	custom x-axis label

Value

relsa data.frame with RELSA scores for each variable, the sum and mean score

mytalbot/RELSA documentation built on May 28, 2022, 11:41 a.m.