Files in mzinkgraf/ConsensusCoExpression
What the package does (short line)

.DS_Store
.Rbuildignore
.gitignore
ConsensusCoExpression.Rproj
DESCRIPTION
Data/.DS_Store
Data/34KarrayGenes.rdata
Data/AT_GO_Universe.txt
Data/DNase_FP_TargetGenes.txt
Data/GA_RNAandLibraries.txt
Data/GO_Universe.txt
Data/GO_terms.txt
Data/GWAS_associations.rdata
Data/Gravitropism_normALLrpkm.txt
Data/MAPPINGatGO2PotriV3.txt
Data/PTRNAseq_WGCNAallGENES_modules.txt
Data/PT_WGCNA_data.rdata
Data/PTat_GO_Universe.txt
Data/Ptrichocarpa_210_annotation_primary.txt
Data/Reproducible_FP_DNaseDEF.txt
Data/TF_binding.txt
Data/Tsai_SUT4_RNAseq.txt
Data/Tsai_drought_module_output.txt
Data/Tsai_rpkm.rdata
Data/Tsai_vascular_drought_module_output.txt
Data/Tsai_vascular_rpkm.rdata
Data/individual_MultiExp.rdata
Data/provenance_sample_locations.txt
Data/provenance_xylem.rdata
Data/provenance_xylem_WGCNAallGENES_modules.txt
Data/pt210_GO_Universe.txt
Data/pt210_gene_features.txt
Data/results/.DS_Store
Data/results/.Rapp.history
Data/results/Consensus_module_ExperMod_heatmap.pdf Data/results/Consensus_module_kME.pdf Data/results/Consensus_woodChem_cor.pdf Data/results/Drought_allMEline.pdf Data/results/Experiment_MEcor.pdf Data/results/Experiments_ME_Dendro.pdf Data/results/GO_compare_grey2random.pdf
Data/results/Grand_analysis_expressions_mods.rdata
Data/results/Grand_mods.RData
Data/results/GraviallMEline.pdf
Data/results/Module_GO.rdata
Data/results/Module_Go_enrichment.pdf Data/results/Module_Go_enrichment_wGery.pdf Data/results/Module_trait_correlation.pdf Data/results/MultiExp_scaleFreeTopologyAnalysis.pdf Data/results/Paralog_module.pdf Data/results/Provenance_allMEline.pdf Data/results/Sample_datasets.pdf
Data/results/Supplementary_Table_1.txt
Data/results/Supplementary_Table_2.xlsx
Data/results/Supplementary_Table_3.xlsx
Data/results/WoodyTissue_allMEline.pdf Data/results/arrayGenesGWAS_modules_enrichment.pdf Data/results/consensusDendro.pdf Data/results/consensus_modules_DNase_enrich_heatmap.pdf Data/results/consensus_modules_TFbinding_heatmap.pdf
Data/results/merge-labels.RData
Data/results/scaleFreeAnalysis-powerTables.RData
Data/results/scaleFreeTopologyAnalysis.pdf
Data/results/subsamplingVascularDatasets.rdata
Data/sample_and_library_names.csv
Data/tensionwood_WGCNAallGENES_moduleSize500.txt
Data/version3_duplications.out
Data/wood_chem_phenotypes.txt
NAMESPACE
R/.DS_Store
R/.Rapp.history
R/ConsensusCoExpression.R R/Fig3_subsample_datasets.R R/GO_populus.R R/NetworkFunctions-Mouse.R R/functions.R R/networkFunctions-extras-05.R man/ConsensusCoExpression-package.Rd
mzinkgraf/ConsensusCoExpression documentation built on May 23, 2017, 9:32 a.m.