Files in mzinkgraf/ConsensusCoExpression

What the package does (short line)

.DS_Store

.Rbuildignore

.gitignore

ConsensusCoExpression.Rproj

DESCRIPTION

Data/.DS_Store

Data/34KarrayGenes.rdata

Data/AT_GO_Universe.txt

Data/DNase_FP_TargetGenes.txt

Data/GA_RNAandLibraries.txt

Data/GO_Universe.txt

Data/GO_terms.txt

Data/GWAS_associations.rdata

Data/Gravitropism_normALLrpkm.txt

Data/MAPPINGatGO2PotriV3.txt

Data/PTRNAseq_WGCNAallGENES_modules.txt

Data/PT_WGCNA_data.rdata

Data/PTat_GO_Universe.txt

Data/Ptrichocarpa_210_annotation_primary.txt

Data/Reproducible_FP_DNaseDEF.txt

Data/TF_binding.txt

Data/Tsai_SUT4_RNAseq.txt

Data/Tsai_drought_module_output.txt

Data/Tsai_rpkm.rdata

Data/Tsai_vascular_drought_module_output.txt

Data/Tsai_vascular_rpkm.rdata

Data/individual_MultiExp.rdata

Data/provenance_sample_locations.txt

Data/provenance_xylem.rdata

Data/provenance_xylem_WGCNAallGENES_modules.txt

Data/pt210_GO_Universe.txt

Data/pt210_gene_features.txt

Data/results/.DS_Store

Data/results/.Rapp.history

Data/results/Consensus_module_ExperMod_heatmap.pdf Data/results/Consensus_module_kME.pdf Data/results/Consensus_woodChem_cor.pdf Data/results/Drought_allMEline.pdf Data/results/Experiment_MEcor.pdf Data/results/Experiments_ME_Dendro.pdf Data/results/GO_compare_grey2random.pdf

Data/results/Grand_analysis_expressions_mods.rdata

Data/results/Grand_mods.RData

Data/results/GraviallMEline.pdf

Data/results/Module_GO.rdata

Data/results/Module_Go_enrichment.pdf Data/results/Module_Go_enrichment_wGery.pdf Data/results/Module_trait_correlation.pdf Data/results/MultiExp_scaleFreeTopologyAnalysis.pdf Data/results/Paralog_module.pdf Data/results/Provenance_allMEline.pdf Data/results/Sample_datasets.pdf

Data/results/Supplementary_Table_1.txt

Data/results/Supplementary_Table_2.xlsx

Data/results/Supplementary_Table_3.xlsx

Data/results/WoodyTissue_allMEline.pdf Data/results/arrayGenesGWAS_modules_enrichment.pdf Data/results/consensusDendro.pdf Data/results/consensus_modules_DNase_enrich_heatmap.pdf Data/results/consensus_modules_TFbinding_heatmap.pdf

Data/results/merge-labels.RData

Data/results/scaleFreeAnalysis-powerTables.RData

Data/results/scaleFreeTopologyAnalysis.pdf

Data/results/subsamplingVascularDatasets.rdata

Data/sample_and_library_names.csv

Data/tensionwood_WGCNAallGENES_moduleSize500.txt

Data/version3_duplications.out

Data/wood_chem_phenotypes.txt

NAMESPACE

R/.DS_Store

R/.Rapp.history

R/ConsensusCoExpression.R R/Fig3_subsample_datasets.R R/GO_populus.R R/NetworkFunctions-Mouse.R R/functions.R R/networkFunctions-extras-05.R man/ConsensusCoExpression-package.Rd

mzinkgraf/ConsensusCoExpression documentation built on May 23, 2019, noon