n8thangreen/HESmanip
Hospital length of stay data preprocessing and analysis

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totaldata_sample: Combined exposed and unexposed sample data

totaldata_sample: Combined exposed and unexposed sample data
In n8thangreen/HESmanip: Hospital length of stay data preprocessing and analysis

Description Usage Format Examples

Description

Combined linked HES-LabBase2 (exposed/infected) sample dataset and unlinked (unexposed/uninfected) HES sample dataset with additional variables.

Usage

1
data(totaldata_sample)

Format

A data frame with 2000 observations on the following 21 variables.

lab_opieid

a factor with levels 09AJW118988/01 09AKW027780/01 09AKW058766/01 09AKW058817/01 09AKW068207/01 09AKW080400/01 09APK032355/01 09ARO001353/01 09ASF048663/01 09ASF049418/01 09ASF049935/01 09ASF050172/01 09ASF050200/01 09ASF053518/01 09BCO094082/01 09BCO101730/01 09BCO103023/01 09BCO105376/01 09BCV066854/01 09BCV071152/01 09BCV073558/01 09BIL017074/01 09BMH065018/01 09BMH065019/01 09BMH066338/01 09BMH066339/01 09BMH067262/01 09BMH067564/01 09BMH067803/01 09BOL005936/01 09BOL006511/01 09BRT034762/01 09BRT034788/01 09BRT035083/01 09BRT036732/01 09BRT037193/01 09BRT037222/01 09BRT037545/01 09BRT037828/01 09BRT037829/01 09BRT038022/01 09BRT038261/01 09BRT038353/01 09BRT038354/01 09BRT038470/01 09BRT038612/01 09BRT038723/01 09BRT039010/01 09BRT039533/01 09BRT039565/01 09BRT039781/01 09BRT039856/01 09BRT040014/01 09BRT040015/01 09BRT040593/01 09BRT040686/01 09BRT041109/01 09BRT041115/01 09BRT041117/01 09BRT043326/01 09BRT045125/01 09BRT045501/01 09BST112039/01 09BST116324/01 09BST116354/01 09BST116356/01 09BST116419/01 09BST117818/01 09BST118913/01 09BST120030/01 09BST121000/01 09BST121515/01 09BST121902/01 09BST123089/01 09BST123101/01 09BST125817/01 09BST126445/01 09BST126461/01 09BST126480/01 09BST126561/01 09BST127492/01 09BST127813/01 09BVH042649/01 09BVH049060/01 09CBG059511/01 09CBG059512/01 09CBG059552/01 09CBG060468/01 09CBG061186/01 09CBG061352/01 09CBG061979/01 09CBG061980/01 09CBG061981/01 09CBG061988/01 09CBG063040/01 09CBG063805/01 09CBG063806/01 09CBG064527/01 09CBG064980/01 09CBG066012/01 09CBG066351/01 09CBG067961/01 09CBG067962/01 09CBG068045/01 09CBG068568/01 09CBG069678/01 09CBG069730/01 09CBG071312/01 09CBG071640/01 09CHF066835/01 09CHF082085/01 09CHS027068/01 09CLS031655/01 09COV043747/01 09COV043748/01 09COV049464/01 09CRW004688/01 09CRW005587/01 09CRW006929/01 09CRW007190/01 09DJP041389/01 09DUL020750/01 09DUL021029/01 09DUL021045/01 09DUL021146/01 09DUL021282/01 09DUL021297/01 09DUL021370/01 09DUL021471/01 09DUL021519/01 09DUL021594/01 09DUL021604/01 09DUL021661/01 09DUL021694/01 09DVH005310/01 09EPH007641/01 09EPH007892/01 09EXE044447/01 09EXE046102/01 09EXE048827/01 09EXE049722/01 09FPH014997/01 09FPH015497/01 09FPH015798/01 09FPH015938/01 09FPH017935/01 09FRE032619/01 09FRE034106/01 09FRE035195/01 09FRE035219/01 09FRE036371/01 09FRE036604/01 09FRE039562/01 09FRE042139/01 09FRE043855/01 09FRE044338/01 09FRE045733/01 09FRE046430/01 09GRA169017/01 09GRA170256/01 09GRA170257/01 09GRA199998/01 09H16601491/01 09H31406161/01 09H44406961/01 09H48205451/01 09HOM036518/01 09HOM039619/01 09HOM039853/01 09HOM039959/01 09HOM044253/01 09HOM044696/01 09HOM046224/01 09HUL065348/01 09HUL070285/01 09HUL070820/01 09HUL071109/01 09HUL071208/01 09HUL071230/01 09HUL072287/01 09HUL072676/01 09ISW034818/01 09ISW035609/01 09ISW035765/01 09ISW035951/01 09KET016008/01 09KET016009/01 09KET016986/01 09LDS203124/01 09LDS203125/01 09LDS203446/01 09LDS203661/01 09LDS203681/01 09LDS206281/01 09LDS206282/01 09LDS206283/01 09LDS206904/01 09LDS207632/01 09LDS211212/01 09LDS211213/01 09LDS211214/01 09LDS212197/01 09LDS212231/01 09LDS214207/01 09LDS214208/01 09LDS214220/01 09LDS215098/01 09LDS215100/01 09LDS217167/01 09LDS217174/01 09LDS217999/01 09LDS218002/01 09LDS218010/01 09LDS218014/01 09LDS218617/01 09LDS218618/01 09LDS218619/01 09LDS218631/01 09LDS219193/01 09LDS219790/01 09LDS220456/01 09LDS224487/01 09LDS225182/01 09LDS227128/01 09LDS229821/01 09LDS230723/01 09LDS230817/01 09LDS232500/01 09LDS233229/01 09LDS233230/01 09LDS233244/01 09LDS234366/01 09LDS234689/01 09LDS238647/01 09LDS238897/01 09LDS239419/01 09LDS239431/01 09LDS241930/01 09LDS244446/01 09LDS247069/01 09LDS247275/01 09LDS247582/01 09LDS247726/01 09LIV000564/01 09LIV000810/01 09LIV001274/01 09LIV001275/01 09LIV001460/01 09LIV001972/01 09LIV002189/01 09LIV003488/01 09LIV003670/01 09LIV005333/01 09LIV005889/01 09LIV006619/01 09LIV006621/01 09LIV009326/01 09LIV009875/01 09LIV011083/01 09LIV011630/01 09LIV012246/01 09LIV012421/01 09LIV014529/01 09LIV018025/01 09LIV021337/01 09LIV022073/01 09LIV022349/01 09LIV025123/01 09LIV026704/01 09LIV028886/01 09LIV029086/01 09LIV966622/01 09LIV968396/01 09LIV972351/01 09LIV973309/01 09LIV973885/01 09LIV982447/01 09LIV983211/01 09LIV983212/01 09LIV983213/01 09LIV983386/01 09LIV985621/01 09LIV985627/01 09LIV985963/01 09LIV985966/01 09LIV986136/01 09LIV986576/01 09LIV986577/01 09LIV986917/01 09LIV987470/01 09LIV988459/01 09LIV989621/01 09LIV990921/01 09LIV991303/01 09LIV991306/01 09LIV992431/01 09LIV994569/01 09LIV995021/01 09LIV997067/01 09LIV997836/01 09LIV997868/01 09LIV999666/01 09LPL015847/01 09LPL016996/01 09LPL018065/01 09LPL018150/01 09LST106826/01 09LST106862/01 09LST107703/01 09LST109295/01 09LST109626/01 09LST110616/01 09LST112525/01 09LST113429/01 09LST113433/01 09LST113471/01 09LST113738/01 09LST114145/01 09LST115698/01 09LUH023798/01 09LUH023843/01 09LUH024220/01 09LUH026725/01 09MAY008663/01 09MAY008664/01 09MAY008941/01 09MAY009479/01 09MAY009890/01 09MAY009907/01 09MBO008129/01 09MBO008231/01 09MBO008327/01 09MDB054390/01 09MDB059528/01 09MDB059529/01 09MIL003587/01 09MMM002175/01 09MMM004459/01 09MMM004462/01 09MMM004523/01 09MMM004547/01 09MMM005455/01 09MMM006128/01 09MMM008445/01 09MMM008892/01 09MMM009721/01 09MMM009887/01 09MMM010299/01 09MMM011601/01 09MMM011997/01 09MMM012186/01 09MMM013012/01 09MMM014742/01 09NOR066606/01 09NOR070312/01 09NOT125533/01 09NOT126041/01 09NOT126341/01 09NOT126759/01 09NOT128497/01 09NOT128642/01 09NOT128643/01 09NOT128645/01 09NOT128646/01 09NOT128652/01 09NOT128977/01 09NOT129703/01 09NOT129948/01 09NOT129949/01 09NOT130192/01 09NOT130657/01 09NOT130690/01 09NOT130710/01 09NOT130732/01 09NOT131370/01 09NOT131669/01 09NOT131694/01 09NOT131715/01 09NOT132695/01 09NOT132972/01 09NOT133819/01 09NOT133986/01 09NOT135194/01 09NOT135982/01 09NOT136310/01 09NOT136322/01 09NOT136336/01 09NOT136509/01 09NOT136754/01 09OXF023054/01 09OXF023135/01 09OXF023445/01 09OXF024243/01 09OXF024393/01 09OXF024609/01 09OXF025415/01 09OXF025743/01 09OXF025843/01 09OXF026490/01 09OXF027015/01 09OXF027622/01 09PET035381/01 09PET036162/01 09PHM015537/01 09PLY047340/01 09POL057329/01 09POL058716/01 09POL060484/01 09POL060695/01 09QUE017263/01 09QUE017634/01 09QUE018783/01 09QUE019687/01 09QUE019920/01 09QUE020290/01 09RBH014465/01 09RHA016070/01 09RHL014616/01 09RHL014617/01 09RHL015285/01 09RHL015636/01 09RHL015639/01 09RHL016636/01 09RHL016656/01 09RHL016968/01 09RTK008161/01 09RTK008295/01 09RTK008394/01 09RTK008445/01 09RTK008937/01 09RTK009074/01 09RTK009222/01 09RTK009359/01 09RTK010514/01 09RTK010593/01 09SHF085990/01 09SHF086181/01 09SHF086251/01 09SHF086299/01 09SHF089078/01 09SHF089079/01 09SHF091668/01 09SHF092066/01 09SHF092456/01 09SHF092910/01 09SHF093384/01 09SHF093422/01 09SHF093440/01 09SHF094852/01 09SHF094859/01 09SHF095284/01 09SHF095350/01 09SHF095351/01 09SHF095476/01 09SHF096715/01 09SHF097303/01 09SHF098505/01 09SHF099207/01 09SHF099490/01 09SHF099855/01 09SHR040109/01 09SHR040409/01 09SHR045969/01 09SHT033310/01 09SHT033355/01 09SHT033813/01 09SHT034073/01 09SHT034110/01 09SHT034523/01 09SHT034695/01 09SHT034739/01 09SHT034856/01 09SHT035980/01 09SHT036140/01 09SHT036378/01 09SHT036907/01 09SHT037273/01 09SHT037795/01 09SHT037842/01 09SHT037868/01 09SHT038198/01 09SHT038203/01 09SHT039060/01 09SHT039307/01 09SHT039308/01 09SHT039802/01 09SHT039997/01 09SHT039998/01 09SHT040164/01 09SHT040221/01 09SHT040332/01 09SHT040543/01 09SHT041113/01 09SLY016636/01 09SND028932/01 09SND030624/01 09SND032858/01 09STO084949/01 09STO085868/01 09STO085906/01 09STO085959/01 09STO086061/01 09STO086101/01 09STO086325/01 09STO086347/01 09STO086854/01 09STO088801/01 09STO088802/01 09SUN053347/01 09SUN054080/01 09SUN055087/01 09SUN055994/01 09SUN057299/01 09SUN058533/01 09SWB007904/01 09SWB009061/01 09SWB010718/01 09SWB010724/01 09SWB011126/01 09TAT053173/01 09TAT055546/01 09TOO048987/01 09TOO049867/01 09TOO050601/01 09TOO050635/01 09TOO050850/01 09TOO050878/01 09TOO051354/01 09TOO051676/01 09TOO051682/01 09TOO052091/01 09TOO052092/01 09TOO052139/01 09TRU054047/01 09TRU056184/01 09TRU056344/01 09TRU056636/01 09TRU056872/01 09WAT016701/01 09WPC014937/01 09WPC015530/01 09WPC015541/01 09XXX000546/01 09XXX002469/01 09ZNC012745/01 09ZNC012795/01 09ZNC012883/01 09ZNC012884/01 09ZNC012921/01 09ZNC012922/01 09ZNC013057/01 09ZNC013064/01 09ZNC013109/01 09ZNC013115/01 09ZNC013194/01 09ZNC013224/01 09ZNC013226/01 09ZNC013339/01 09ZNC013346/01 09ZNC013359/01 09ZNC013394/01 09ZNC013406/01 09ZNC013407/01 09ZNC013429/01 09ZNC013497/01 09ZNC013520/01 09ZNC013544/01 09ZNC013556/01 09ZNC013569/01 09ZNC013579/01 09ZNC013600/01 09ZNC013642/01 09ZNC013647/01 09ZNC013648/01 09ZNC013654/01 09ZNC013759/01 09ZNC013766/01 09ZNC013794/01 09ZNC013803/01 09ZNC013853/01 09ZNC013903/01 09ZNC013924/01 09ZNC014097/01 09ZNC014098/01 09ZNC014099/01 09ZNC014110/01 09ZNC014308/01 09ZNC014547/01 09ZUZ034315/01 09ZUZ036824/01 09ZVE028550/01 09ZVE029208/01 09ZVE029301/01 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09ZXK039709/01 09ZXK040167/01 09ZXK040168/01 09ZXK040169/01 09ZXK040227/01 09ZXK040229/01 09ZXK040230/01 09ZXK040578/01 09ZXK040579/01 09ZXK040806/01 09ZXK041008/01 09ZXK041393/01 09ZXK041507/01 09ZXK041652/01 09ZXK041674/01 09ZXM001607/01 09ZXM001617/01 09ZXM001620/01 09ZXM001629/01 09ZXM001630/01 09ZXM001633/01 09ZXM001638/01 09ZXM001643/01 09ZXM001647/01 09ZXM001650/01 09ZXM001654/01 09ZXM001655/01 09ZXM001668/01 09ZXT011315/01 09ZXV023134/01 09ZXV023501/01 09ZXV023752/01 09ZXV024331/01 09ZXV024332/01 09ZXV024346/01 09ZXV024348/01 09ZXV024427/01 09ZXV024434/01 09ZXV024898/01 09ZXV024902/01 09ZXV026513/01 09ZXV026610/01 09ZXX072533/01 09ZXX072971/01 09ZXX073141/01 09ZXX073301/01 09ZXX073302/01 09ZXZ060093/01 09ZXZ060976/01 09ZXZ063795/01 09ZXZ063929/01 09ZXZ064105/01 09ZXZ064106/01 09ZXZ065242/01 09ZXZ065316/01 09ZYF020338/01 09ZYK004340/01 09ZYN030099/01 09ZYN032848/01 09ZYP008021/01 09ZYV048268/01 09ZYW038458/01 09ZYW046765/01 09ZYW048011/01 09ZYX026472/01 09ZYX027748/01 09ZYX028438/01 09ZYX028682/01 09ZYZ056309/01 09ZZH027046/01 09ZZH027827/01 09ZZO035150/01 09ZZO035611/01 09ZZO036107/01 09ZZO036121/01 10AKW088788/01 10APS046357/01 10AQE027697/01 10AQM022560/01 10BAS021139/01 10BCO107711/01 10BCV080519/01 10BOL006918/01 10BRT048419/01 10BRT048420/01 10BRT051081/01 10BST130929/01 10BST133828/01 10BST135209/01 10CBG072835/01 10CBG073584/01 10CBG073985/01 10DJP043230/01 10DUL022181/01 10FPH100653/01 10FPH100697/01 10FPH100736/01 10FRE061791/01 10GRA210872/01 10H06200871/01 10H07806381/01 10H12803281/01 10HOM050109/01 10HOM050190/01 10HUL075666/01 10ISW040088/01 10KET017738/01 10KET017814/01 10LDS249787/01 10LDS250292/01 10LDS251375/01 10LDS251381/01 10LDS252447/01 10LDS253685/01 10LDS255028/01 10LDS255660/01 10LDS259522/01 10LIV030669/01 10LIV032094/01 10LIV032685/01 10LIV034565/01 10LIV038437/01 10LIV039900/01 10LIV041177/01 10LIV041178/01 10LIV047447/01 10LIV055818/01 10LST115716/01 10LST115717/01 10LST115947/01 10LST116077/01 10LST116577/01 10LST116651/01 10LST117178/01 10LST117212/01 10LST117213/01 10LST117438/01 10LST118200/01 10LUH027649/01 10MAY011096/01 10MBO009818/01 10MMM018222/01 10MMM019081/01 10MMM019168/01 10MMM019693/01 10MMM020159/01 10MMM022342/01 10MMM023216/01 10MMM023344/01 10MMM023763/01 10MMM024991/01 10MMM026082/01 10MMM027942/01 10NOT137225/01 10NOT137457/01 10NOT138643/01 10NOT138644/01 10NOT138961/01 10NOT138962/01 10NOT138963/01 10NOT139582/01 10OXF030362/01 10POL066981/01 10POL067013/01 10RBH015251/01 10RHL018213/01 10RHL018253/01 10RHL019278/01 10RTK010873/01 10SHF100296/01 10SHF100854/01 10SHF102422/01 10SHF103116/01 10SHF103283/01 10SHR047728/01 10SHR048990/01 10SHT041349/01 10SHT041381/01 10SHT041467/01 10SHT041502/01 10SHT041503/01 10SHT041806/01 10SHT042136/01 10SHT042181/01 10SHT042182/01 10SHT042183/01 10SHT042187/01 10SHT042195/01 10SHT042205/01 10SHT042251/01 10SHT042457/01 10SHT042458/01 10SUN061022/01 10SWB014814/01 10TOO053138/01 10TOO053179/01 10TOO054160/01 10TOO054416/01 10TOO055020/01 10TOO055234/01 10WIR001110/01 10WIR001485/01 10WIR002378/01 10WIR002379/01 10WPC015640/01 10ZNC014584/01 10ZNC014634/01 10ZNC014636/01 10ZNC014671/01 10ZNC014685/01 10ZNC014705/01 10ZNC014706/01 10ZNC014717/01 10ZUZ039013/01 10ZVO000839/01 10ZVU020514/01 10ZWB458347/01 10ZWB458348/01 10ZWB458357/01 10ZWB458375/01 10ZWB458522/01 10ZWB458622/01 10ZWB459195/01 10ZWB459294/01 10ZWB459454/01 10ZWB460489/01 10ZWB461742/01 10ZWB470020/01 10ZWB470529/01 10ZWB470617/01 10ZWG143850/01 10ZWG146456/01 10ZWG148032/01 10ZWG148437/01 10ZWG148959/01 10ZWG151935/01 10ZWG152282/01 10ZWG152411/01 10ZWG152950/01 10ZWG153498/01 10ZWG156299/01 10ZWG156807/01 10ZWG157557/01 10ZWG168981/01 10ZWG169247/01 10ZWG169435/01 10ZWX027189/01 10ZXC024491/01 10ZXD012033/01 10ZXD012077/01 10ZXD012078/01 10ZXD012079/01 10ZXG017775/01 10ZXK041838/01 10ZXK042946/01 10ZXK043237/01 10ZXT011436/01 10ZXV027768/01 10ZXV027770/01 10ZXV028254/01 10ZXV028739/01 10ZXZ066413/01 10ZXZ066571/01 10ZXZ066572/01 10ZXZ066865/01 10ZXZ066997/01 10ZYA013333/01 10ZYW050987/01 10ZYW051326/01 10ZZD024464/01 10ZZD024465/01

hes_ID

a numeric vector

lab_Specimendate

a factor with levels 2009-01-01 2009-01-02 2009-01-03 2009-01-04 2009-01-06 2009-01-07 2009-01-08 2009-01-09 2009-01-11 2009-01-12 2009-01-15 2009-01-16 2009-01-18 2009-01-19 2009-01-20 2009-01-21 2009-01-22 2009-01-24 2009-01-25 2009-01-26 2009-01-27 2009-01-28 2009-01-29 2009-01-30 2009-01-31 2009-02-01 2009-02-02 2009-02-03 2009-02-04 2009-02-05 2009-02-06 2009-02-07 2009-02-09 2009-02-10 2009-02-11 2009-02-12 2009-02-13 2009-02-14 2009-02-15 2009-02-16 2009-02-17 2009-02-18 2009-02-19 2009-02-20 2009-02-21 2009-02-22 2009-02-23 2009-02-24 2009-02-25 2009-02-26 2009-02-27 2009-02-28 2009-03-01 2009-03-02 2009-03-03 2009-03-04 2009-03-05 2009-03-06 2009-03-08 2009-03-09 2009-03-10 2009-03-11 2009-03-13 2009-03-14 2009-03-17 2009-03-20 2009-03-21 2009-03-22 2009-03-23 2009-03-24 2009-03-25 2009-03-26 2009-03-27 2009-03-28 2009-03-29 2009-03-30 2009-04-01 2009-04-02 2009-04-03 2009-04-04 2009-04-05 2009-04-06 2009-04-07 2009-04-08 2009-04-09 2009-04-10 2009-04-11 2009-04-12 2009-04-13 2009-04-14 2009-04-15 2009-04-16 2009-04-17 2009-04-18 2009-04-19 2009-04-20 2009-04-21 2009-04-22 2009-04-23 2009-04-24 2009-04-27 2009-04-28 2009-04-29 2009-04-30 2009-05-01 2009-05-03 2009-05-04 2009-05-05 2009-05-06 2009-05-07 2009-05-08 2009-05-09 2009-05-11 2009-05-12 2009-05-13 2009-05-14 2009-05-15 2009-05-16 2009-05-18 2009-05-19 2009-05-20 2009-05-21 2009-05-22 2009-05-23 2009-05-24 2009-05-25 2009-05-26 2009-05-27 2009-05-28 2009-05-29 2009-05-30 2009-05-31 2009-06-01 2009-06-02 2009-06-03 2009-06-04 2009-06-05 2009-06-06 2009-06-08 2009-06-09 2009-06-10 2009-06-11 2009-06-12 2009-06-13 2009-06-14 2009-06-15 2009-06-16 2009-06-17 2009-06-18 2009-06-19 2009-06-20 2009-06-21 2009-06-22 2009-06-23 2009-06-24 2009-06-25 2009-06-26 2009-06-27 2009-06-28 2009-06-29 2009-06-30 2009-07-01 2009-07-04 2009-07-05 2009-07-08 2009-07-09 2009-07-11 2009-07-12 2009-07-13 2009-07-14 2009-07-15 2009-07-16 2009-07-17 2009-07-18 2009-07-19 2009-07-20 2009-07-21 2009-07-22 2009-07-23 2009-07-24 2009-07-25 2009-07-26 2009-07-27 2009-07-28 2009-07-29 2009-07-30 2009-07-31 2009-08-01 2009-08-02 2009-08-03 2009-08-04 2009-08-05 2009-08-06 2009-08-07 2009-08-08 2009-08-09 2009-08-10 2009-08-11 2009-08-13 2009-08-14 2009-08-16 2009-08-17 2009-08-18 2009-08-19 2009-08-20 2009-08-21 2009-08-22 2009-08-24 2009-08-25 2009-08-26 2009-08-27 2009-08-28 2009-08-29 2009-08-30 2009-08-31 2009-09-01 2009-09-02 2009-09-07 2009-09-08 2009-09-10 2009-09-11 2009-09-12 2009-09-13 2009-09-15 2009-09-16 2009-09-17 2009-09-18 2009-09-20 2009-09-21 2009-09-22 2009-09-23 2009-09-24 2009-09-25 2009-09-26 2009-09-27 2009-09-28 2009-09-29 2009-09-30 2009-10-01 2009-10-02 2009-10-03 2009-10-04 2009-10-05 2009-10-06 2009-10-07 2009-10-08 2009-10-09 2009-10-10 2009-10-11 2009-10-12 2009-10-13 2009-10-14 2009-10-16 2009-10-17 2009-10-18 2009-10-19 2009-10-20 2009-10-22 2009-10-23 2009-10-24 2009-10-25 2009-10-26 2009-10-28 2009-10-29 2009-10-30 2009-11-01 2009-11-02 2009-11-03 2009-11-04 2009-11-05 2009-11-06 2009-11-07 2009-11-08 2009-11-09 2009-11-10 2009-11-11 2009-11-12 2009-11-13 2009-11-14 2009-11-15 2009-11-18 2009-11-19 2009-11-20 2009-11-21 2009-11-23 2009-11-24 2009-11-25 2009-11-26 2009-11-27 2009-11-28 2009-11-29 2009-11-30 2009-12-01 2009-12-02 2009-12-04 2009-12-05 2009-12-06 2009-12-07 2009-12-08 2009-12-09 2009-12-10 2009-12-11 2009-12-12 2009-12-14 2009-12-15 2009-12-16 2009-12-17 2009-12-18 2009-12-19 2009-12-21 2009-12-22 2009-12-23 2009-12-25 2009-12-26 2009-12-27 2009-12-28 2009-12-29 2009-12-31 2010-01-01 2010-01-02 2010-01-03 2010-01-04 2010-01-06 2010-01-07 2010-01-08 2010-01-09 2010-01-10 2010-01-11 2010-01-12 2010-01-13 2010-01-14 2010-01-16 2010-01-17 2010-01-18 2010-01-19 2010-01-21 2010-01-22 2010-01-23 2010-01-24 2010-01-25 2010-01-27 2010-01-29 2010-01-30 2010-01-31 2010-02-01 2010-02-03 2010-02-04 2010-02-05 2010-02-07 2010-02-08 2010-02-09 2010-02-11 2010-02-12 2010-02-13 2010-02-14 2010-02-15 2010-02-16 2010-02-17 2010-02-18 2010-02-19 2010-02-20 2010-02-21 2010-02-23 2010-02-25 2010-02-26 2010-02-27 2010-03-01 2010-03-02 2010-03-03 2010-03-04 2010-03-05 2010-03-08 2010-03-10 2010-03-12 2010-03-13 2010-03-14 2010-03-18 2010-03-19 2010-03-20 2010-03-23 2010-03-24 2010-03-25 2010-03-29

hes_admdte

a factor with levels 2007-10-31 2008-01-02 2008-01-06 2008-02-17 2008-02-25 2008-03-05 2008-03-13 2008-03-20 2008-03-26 2008-03-28 2008-03-29 2008-03-30 2008-03-31 2008-04-01 2008-04-03 2008-04-04 2008-04-05 2008-04-06 2008-04-07 2008-04-08 2008-04-09 2008-04-10 2008-04-11 2008-04-12 2008-04-13 2008-04-15 2008-04-17 2008-04-18 2008-04-19 2008-04-20 2008-04-21 2008-04-23 2008-04-27 2008-04-28 2008-04-29 2008-04-30 2008-05-01 2008-05-02 2008-05-03 2008-05-06 2008-05-07 2008-05-08 2008-05-10 2008-05-11 2008-05-12 2008-05-13 2008-05-14 2008-05-15 2008-05-17 2008-05-18 2008-05-20 2008-05-21 2008-05-25 2008-05-26 2008-05-27 2008-05-28 2008-05-30 2008-05-31 2008-06-03 2008-06-04 2008-06-05 2008-06-06 2008-06-07 2008-06-09 2008-06-12 2008-06-13 2008-06-15 2008-06-17 2008-06-19 2008-06-20 2008-06-21 2008-06-22 2008-06-24 2008-06-26 2008-06-27 2008-06-28 2008-06-29 2008-06-30 2008-07-01 2008-07-02 2008-07-03 2008-07-04 2008-07-05 2008-07-06 2008-07-08 2008-07-10 2008-07-11 2008-07-12 2008-07-14 2008-07-15 2008-07-17 2008-07-18 2008-07-20 2008-07-21 2008-07-22 2008-07-24 2008-07-26 2008-07-27 2008-07-28 2008-07-29 2008-07-30 2008-07-31 2008-08-01 2008-08-03 2008-08-04 2008-08-05 2008-08-08 2008-08-09 2008-08-11 2008-08-12 2008-08-13 2008-08-14 2008-08-15 2008-08-17 2008-08-19 2008-08-20 2008-08-24 2008-08-25 2008-08-26 2008-08-30 2008-08-31 2008-09-01 2008-09-02 2008-09-03 2008-09-04 2008-09-05 2008-09-06 2008-09-07 2008-09-08 2008-09-09 2008-09-10 2008-09-11 2008-09-12 2008-09-13 2008-09-15 2008-09-16 2008-09-17 2008-09-19 2008-09-21 2008-09-23 2008-09-25 2008-09-27 2008-09-28 2008-09-29 2008-09-30 2008-10-01 2008-10-03 2008-10-04 2008-10-07 2008-10-09 2008-10-10 2008-10-11 2008-10-12 2008-10-13 2008-10-14 2008-10-16 2008-10-18 2008-10-20 2008-10-21 2008-10-22 2008-10-23 2008-10-24 2008-10-25 2008-10-26 2008-10-27 2008-10-28 2008-10-29 2008-10-30 2008-10-31 2008-11-02 2008-11-03 2008-11-05 2008-11-06 2008-11-07 2008-11-09 2008-11-10 2008-11-11 2008-11-12 2008-11-13 2008-11-14 2008-11-15 2008-11-16 2008-11-17 2008-11-18 2008-11-19 2008-11-20 2008-11-21 2008-11-22 2008-11-24 2008-11-26 2008-11-27 2008-11-28 2008-11-29 2008-11-30 2008-12-01 2008-12-02 2008-12-03 2008-12-04 2008-12-05 2008-12-06 2008-12-07 2008-12-08 2008-12-09 2008-12-10 2008-12-11 2008-12-12 2008-12-13 2008-12-14 2008-12-15 2008-12-16 2008-12-17 2008-12-18 2008-12-19 2008-12-20 2008-12-21 2008-12-22 2008-12-23 2008-12-24 2008-12-25 2008-12-26 2008-12-27 2008-12-28 2008-12-29 2008-12-30 2008-12-31 2009-01-01 2009-01-02 2009-01-03 2009-01-04 2009-01-05 2009-01-06 2009-01-07 2009-01-08 2009-01-09 2009-01-10 2009-01-11 2009-01-12 2009-01-13 2009-01-14 2009-01-15 2009-01-16 2009-01-17 2009-01-18 2009-01-19 2009-01-20 2009-01-21 2009-01-22 2009-01-23 2009-01-24 2009-01-25 2009-01-26 2009-01-27 2009-01-28 2009-01-29 2009-01-30 2009-01-31 2009-02-01 2009-02-02 2009-02-03 2009-02-04 2009-02-05 2009-02-06 2009-02-07 2009-02-08 2009-02-09 2009-02-10 2009-02-11 2009-02-12 2009-02-13 2009-02-14 2009-02-15 2009-02-16 2009-02-17 2009-02-18 2009-02-19 2009-02-20 2009-02-21 2009-02-22 2009-02-23 2009-02-24 2009-02-25 2009-02-26 2009-02-27 2009-02-28 2009-03-01 2009-03-02 2009-03-03 2009-03-04 2009-03-05 2009-03-06 2009-03-07 2009-03-08 2009-03-09 2009-03-10 2009-03-11 2009-03-12 2009-03-13 2009-03-14 2009-03-15 2009-03-16 2009-03-17 2009-03-18 2009-03-19 2009-03-20 2009-03-21 2009-03-22 2009-03-23 2009-03-24 2009-03-25 2009-03-26 2009-03-27 2009-03-28 2009-03-29 2009-03-30 2009-04-01 2009-04-02 2009-04-03 2009-04-05 2009-04-06 2009-04-08 2009-04-09 2009-04-10 2009-04-11 2009-04-12 2009-04-13 2009-04-14 2009-04-16 2009-04-17 2009-04-18 2009-04-20 2009-04-21 2009-04-22 2009-04-23 2009-04-24 2009-04-25 2009-04-26 2009-04-27 2009-04-28 2009-04-29 2009-04-30 2009-05-01 2009-05-02 2009-05-03 2009-05-04 2009-05-05 2009-05-06 2009-05-07 2009-05-08 2009-05-09 2009-05-10 2009-05-11 2009-05-13 2009-05-14 2009-05-15 2009-05-16 2009-05-17 2009-05-18 2009-05-20 2009-05-21 2009-05-22 2009-05-23 2009-05-24 2009-05-25 2009-05-27 2009-05-28 2009-05-29 2009-06-01 2009-06-02 2009-06-03 2009-06-05 2009-06-06 2009-06-07 2009-06-08 2009-06-09 2009-06-11 2009-06-13 2009-06-15 2009-06-16 2009-06-17 2009-06-18 2009-06-19 2009-06-21 2009-06-22 2009-06-23 2009-06-24 2009-06-25 2009-06-26 2009-06-27 2009-06-30 2009-07-02 2009-07-03 2009-07-04 2009-07-05 2009-07-06 2009-07-07 2009-07-08 2009-07-09 2009-07-10 2009-07-11 2009-07-12 2009-07-13 2009-07-14 2009-07-15 2009-07-16 2009-07-17 2009-07-18 2009-07-19 2009-07-20 2009-07-21 2009-07-22 2009-07-23 2009-07-24 2009-07-25 2009-07-27 2009-07-28 2009-07-30 2009-07-31 2009-08-01 2009-08-02 2009-08-03 2009-08-05 2009-08-06 2009-08-07 2009-08-08 2009-08-09 2009-08-10 2009-08-11 2009-08-12 2009-08-13 2009-08-15 2009-08-16 2009-08-17 2009-08-18 2009-08-19 2009-08-23 2009-08-24 2009-08-25 2009-08-26 2009-08-27 2009-08-28 2009-08-30 2009-08-31 2009-09-01 2009-09-02 2009-09-03 2009-09-04 2009-09-05 2009-09-06 2009-09-07 2009-09-08 2009-09-09 2009-09-10 2009-09-11 2009-09-12 2009-09-13 2009-09-14 2009-09-15 2009-09-17 2009-09-18 2009-09-19 2009-09-20 2009-09-21 2009-09-22 2009-09-23 2009-09-24 2009-09-25 2009-09-26 2009-09-28 2009-09-29 2009-09-30 2009-10-01 2009-10-02 2009-10-03 2009-10-04 2009-10-05 2009-10-07 2009-10-08 2009-10-09 2009-10-10 2009-10-12 2009-10-13 2009-10-14 2009-10-15 2009-10-16 2009-10-17 2009-10-18 2009-10-19 2009-10-20 2009-10-21 2009-10-22 2009-10-23 2009-10-25 2009-10-27 2009-10-28 2009-10-29 2009-10-30 2009-10-31 2009-11-01 2009-11-02 2009-11-04 2009-11-05 2009-11-06 2009-11-07 2009-11-08 2009-11-09 2009-11-10 2009-11-11 2009-11-13 2009-11-14 2009-11-15 2009-11-16 2009-11-17 2009-11-18 2009-11-19 2009-11-23 2009-11-25 2009-11-26 2009-11-27 2009-11-28 2009-12-01 2009-12-02 2009-12-03 2009-12-05 2009-12-06 2009-12-07 2009-12-08 2009-12-09 2009-12-10 2009-12-11 2009-12-13 2009-12-14 2009-12-15 2009-12-16 2009-12-17 2009-12-18 2009-12-19 2009-12-20 2009-12-21 2009-12-23 2009-12-24 2009-12-25 2009-12-27 2009-12-28 2009-12-30 2010-01-02 2010-01-03 2010-01-05 2010-01-06 2010-01-08 2010-01-09 2010-01-13 2010-01-14 2010-01-15 2010-01-16 2010-01-18 2010-01-20 2010-01-21 2010-01-22 2010-01-23 2010-01-24 2010-01-26 2010-01-27 2010-01-28 2010-01-29 2010-01-30 2010-02-01 2010-02-02 2010-02-03 2010-02-06 2010-02-08 2010-02-11 2010-02-12 2010-02-13 2010-02-14 2010-02-15 2010-02-16 2010-02-18 2010-02-19 2010-02-20 2010-02-22 2010-02-23 2010-02-25 2010-02-27 2010-02-28 2010-03-01 2010-03-02 2010-03-03 2010-03-05 2010-03-07 2010-03-08 2010-03-09 2010-03-11 2010-03-15 2010-03-17 2010-03-18 2010-03-21 2010-03-26

hes_disdte

a factor with levels 2008-04-02 2008-04-03 2008-04-04 2008-04-05 2008-04-06 2008-04-07 2008-04-08 2008-04-09 2008-04-10 2008-04-11 2008-04-14 2008-04-15 2008-04-19 2008-04-20 2008-04-21 2008-04-22 2008-04-23 2008-04-24 2008-04-27 2008-04-28 2008-04-29 2008-05-01 2008-05-03 2008-05-09 2008-05-10 2008-05-11 2008-05-12 2008-05-13 2008-05-16 2008-05-19 2008-05-22 2008-05-23 2008-05-24 2008-05-25 2008-05-27 2008-05-28 2008-05-29 2008-05-30 2008-05-31 2008-06-01 2008-06-03 2008-06-04 2008-06-05 2008-06-06 2008-06-07 2008-06-08 2008-06-10 2008-06-11 2008-06-12 2008-06-16 2008-06-17 2008-06-18 2008-06-19 2008-06-22 2008-06-23 2008-06-24 2008-06-25 2008-06-26 2008-06-27 2008-07-02 2008-07-03 2008-07-04 2008-07-05 2008-07-06 2008-07-08 2008-07-09 2008-07-10 2008-07-11 2008-07-12 2008-07-15 2008-07-17 2008-07-18 2008-07-19 2008-07-20 2008-07-21 2008-07-22 2008-07-23 2008-07-28 2008-07-29 2008-07-30 2008-07-31 2008-08-01 2008-08-02 2008-08-03 2008-08-04 2008-08-05 2008-08-06 2008-08-08 2008-08-09 2008-08-10 2008-08-12 2008-08-13 2008-08-14 2008-08-15 2008-08-16 2008-08-17 2008-08-18 2008-08-20 2008-08-21 2008-08-22 2008-08-23 2008-08-24 2008-08-26 2008-08-27 2008-08-29 2008-08-30 2008-09-01 2008-09-02 2008-09-04 2008-09-06 2008-09-07 2008-09-09 2008-09-10 2008-09-11 2008-09-13 2008-09-14 2008-09-15 2008-09-16 2008-09-17 2008-09-18 2008-09-19 2008-09-20 2008-09-22 2008-09-23 2008-09-24 2008-09-25 2008-09-26 2008-09-27 2008-09-30 2008-10-01 2008-10-03 2008-10-05 2008-10-06 2008-10-07 2008-10-08 2008-10-10 2008-10-11 2008-10-12 2008-10-13 2008-10-14 2008-10-16 2008-10-20 2008-10-21 2008-10-23 2008-10-24 2008-10-27 2008-10-29 2008-10-30 2008-10-31 2008-11-01 2008-11-02 2008-11-03 2008-11-05 2008-11-06 2008-11-07 2008-11-11 2008-11-12 2008-11-14 2008-11-15 2008-11-16 2008-11-18 2008-11-19 2008-11-20 2008-11-21 2008-11-22 2008-11-24 2008-11-26 2008-11-27 2008-11-28 2008-11-29 2008-11-30 2008-12-02 2008-12-03 2008-12-04 2008-12-05 2008-12-07 2008-12-08 2008-12-09 2008-12-11 2008-12-12 2008-12-14 2008-12-15 2008-12-16 2008-12-17 2008-12-18 2008-12-19 2008-12-20 2008-12-21 2008-12-22 2008-12-23 2008-12-25 2008-12-27 2008-12-28 2008-12-30 2008-12-31 2009-01-01 2009-01-02 2009-01-04 2009-01-05 2009-01-06 2009-01-07 2009-01-08 2009-01-09 2009-01-10 2009-01-11 2009-01-12 2009-01-13 2009-01-14 2009-01-15 2009-01-16 2009-01-17 2009-01-18 2009-01-19 2009-01-20 2009-01-21 2009-01-22 2009-01-23 2009-01-24 2009-01-25 2009-01-26 2009-01-27 2009-01-28 2009-01-29 2009-01-30 2009-01-31 2009-02-01 2009-02-02 2009-02-03 2009-02-04 2009-02-05 2009-02-06 2009-02-08 2009-02-09 2009-02-10 2009-02-11 2009-02-12 2009-02-13 2009-02-14 2009-02-15 2009-02-16 2009-02-17 2009-02-18 2009-02-19 2009-02-20 2009-02-21 2009-02-22 2009-02-23 2009-02-24 2009-02-25 2009-02-26 2009-02-27 2009-02-28 2009-03-01 2009-03-02 2009-03-03 2009-03-04 2009-03-05 2009-03-06 2009-03-07 2009-03-08 2009-03-09 2009-03-10 2009-03-11 2009-03-12 2009-03-13 2009-03-14 2009-03-15 2009-03-16 2009-03-17 2009-03-18 2009-03-19 2009-03-20 2009-03-21 2009-03-22 2009-03-23 2009-03-24 2009-03-25 2009-03-26 2009-03-27 2009-03-28 2009-03-29 2009-03-30 2009-03-31 2009-04-01 2009-04-02 2009-04-03 2009-04-07 2009-04-10 2009-04-11 2009-04-12 2009-04-13 2009-04-14 2009-04-15 2009-04-17 2009-04-18 2009-04-19 2009-04-20 2009-04-21 2009-04-22 2009-04-23 2009-04-26 2009-04-27 2009-04-29 2009-04-30 2009-05-01 2009-05-02 2009-05-03 2009-05-04 2009-05-05 2009-05-06 2009-05-07 2009-05-08 2009-05-10 2009-05-12 2009-05-13 2009-05-14 2009-05-15 2009-05-16 2009-05-17 2009-05-18 2009-05-19 2009-05-21 2009-05-22 2009-05-26 2009-05-27 2009-05-28 2009-05-29 2009-05-30 2009-06-01 2009-06-02 2009-06-03 2009-06-04 2009-06-05 2009-06-06 2009-06-07 2009-06-08 2009-06-09 2009-06-11 2009-06-12 2009-06-13 2009-06-15 2009-06-16 2009-06-18 2009-06-19 2009-06-22 2009-06-23 2009-06-24 2009-06-25 2009-06-26 2009-06-27 2009-06-28 2009-06-29 2009-06-30 2009-07-01 2009-07-02 2009-07-03 2009-07-04 2009-07-06 2009-07-07 2009-07-08 2009-07-09 2009-07-10 2009-07-11 2009-07-12 2009-07-13 2009-07-14 2009-07-16 2009-07-17 2009-07-18 2009-07-20 2009-07-21 2009-07-22 2009-07-23 2009-07-24 2009-07-25 2009-07-27 2009-07-28 2009-07-29 2009-07-30 2009-07-31 2009-08-03 2009-08-04 2009-08-05 2009-08-06 2009-08-07 2009-08-09 2009-08-10 2009-08-11 2009-08-12 2009-08-13 2009-08-14 2009-08-15 2009-08-16 2009-08-17 2009-08-18 2009-08-19 2009-08-21 2009-08-22 2009-08-24 2009-08-25 2009-08-26 2009-08-27 2009-08-29 2009-09-01 2009-09-02 2009-09-03 2009-09-04 2009-09-05 2009-09-06 2009-09-07 2009-09-08 2009-09-09 2009-09-10 2009-09-11 2009-09-12 2009-09-13 2009-09-14 2009-09-15 2009-09-16 2009-09-17 2009-09-19 2009-09-21 2009-09-22 2009-09-24 2009-09-25 2009-09-28 2009-09-29 2009-09-30 2009-10-01 2009-10-02 2009-10-03 2009-10-04 2009-10-05 2009-10-06 2009-10-07 2009-10-08 2009-10-09 2009-10-10 2009-10-11 2009-10-12 2009-10-13 2009-10-14 2009-10-15 2009-10-16 2009-10-18 2009-10-19 2009-10-20 2009-10-21 2009-10-22 2009-10-23 2009-10-24 2009-10-25 2009-10-26 2009-10-27 2009-10-28 2009-10-29 2009-10-30 2009-10-31 2009-11-01 2009-11-02 2009-11-03 2009-11-04 2009-11-05 2009-11-06 2009-11-07 2009-11-08 2009-11-09 2009-11-11 2009-11-12 2009-11-13 2009-11-14 2009-11-15 2009-11-16 2009-11-17 2009-11-18 2009-11-19 2009-11-20 2009-11-21 2009-11-22 2009-11-23 2009-11-24 2009-11-25 2009-11-27 2009-11-28 2009-11-30 2009-12-01 2009-12-02 2009-12-03 2009-12-04 2009-12-07 2009-12-08 2009-12-09 2009-12-10 2009-12-11 2009-12-12 2009-12-13 2009-12-14 2009-12-15 2009-12-16 2009-12-17 2009-12-18 2009-12-19 2009-12-20 2009-12-21 2009-12-22 2009-12-23 2009-12-24 2009-12-27 2009-12-28 2009-12-29 2009-12-30 2009-12-31 2010-01-01 2010-01-02 2010-01-04 2010-01-05 2010-01-06 2010-01-07 2010-01-08 2010-01-09 2010-01-10 2010-01-11 2010-01-12 2010-01-13 2010-01-14 2010-01-15 2010-01-17 2010-01-18 2010-01-19 2010-01-21 2010-01-22 2010-01-25 2010-01-26 2010-01-27 2010-01-28 2010-01-29 2010-01-31 2010-02-01 2010-02-02 2010-02-03 2010-02-04 2010-02-05 2010-02-06 2010-02-08 2010-02-09 2010-02-10 2010-02-11 2010-02-12 2010-02-15 2010-02-17 2010-02-19 2010-02-20 2010-02-21 2010-02-22 2010-02-23 2010-02-24 2010-02-25 2010-02-26 2010-02-28 2010-03-01 2010-03-02 2010-03-03 2010-03-04 2010-03-05 2010-03-07 2010-03-08 2010-03-13 2010-03-15 2010-03-16 2010-03-17 2010-03-18 2010-03-19 2010-03-20 2010-03-21 2010-03-22 2010-03-23 2010-03-25 2010-03-26 2010-03-27 2010-03-28 2010-03-29 2010-03-30 2010-03-31

adm_diff_specdate

a numeric vector

dis_diff_specdate

a numeric vector

hes_dismethdescription

a factor with levels Died Discharged on clinical advice or with clinical consent Not applicable patient still in hospital Not known Self discharged or discharged by a relative or advocate

adm_diff_dis

a numeric vector

hes_sexdescription

a factor with levels Female Male

hes_ageatstartofepisode

a numeric vector

hes_dischargeddeadoralive

a factor with levels Death Live

lab_organismname

a factor with levels ACHROMOBACTER OTHER NAMED ACINETOBACTER BAUMANII ACINETOBACTER LWOFFII ACINETOBACTER SP AEROCOCCUS VIRIDANS AEROMONAS SP AGROBACTERIUM RADIOBACTER (AGROBACTERIUM TUMEFACIENS) BACILLUS OTHER NAMED BACILLUS SP BACTEROIDES FRAGILIS CHRYSEOBACTERIUM MENINGOSEPTICUM CHRYSEOMONAS LUTEOLA CITROBACTER FREUNDII CITROBACTER KOSERI (C. DIVERSUS) COLIFORM CORYNEBACTERIUM SP CORYNEBACTERIUM STRIATUM DIPHTHEROIDS EIKENELLA CORRODENS ENTEROBACTER AEROGENES ENTEROBACTER CLOACAE ENTEROBACTER OTHER NAMED ENTEROBACTER SP ENTEROCOCCUS AVIUM ENTEROCOCCUS FAECALIS ENTEROCOCCUS FAECIUM ENTEROCOCCUS GALLINARUM ENTEROCOCCUS HIRAE ENTEROCOCCUS SP ESCHERICHIA COLI FUSOBACTERIUM NECROPHORUM (SPHAEROPHUS NECROPHORUM) HAEMOPHILUS INFLUENZAE HAEMOPHILUS SP KLEBSIELLA AEROGENES KLEBSIELLA OXYTOCA KLEBSIELLA PNEUMONIAE KLEBSIELLA SP KLUYVERA SP LACTOCOCCUS LACTIS LEUCONOSTOC SP MICROCOCCUS SP MORAXELLA CATARRHALIS MORAXELLA OSLOENSIS MYCOBACTERIUM AVIUM-INTRACELLULARE GROUP (MAI) MYCOBACTERIUM CHELONAE MYCOBACTERIUM SP NEISSERIA GONORRHOEAE NEISSERIA MENINGITIDIS NEISSERIA OTHER NAMED NEISSERIA SP PANTOEA AGGLOMERANS (ERWINIA HERBICOLA) PASTEURELLA HAEMOLYTICA PREVOTELLA SP PROTEUS MIRABILIS PSEUDOMONAS AERUGINOSA PSEUDOMONAS SP SALMONELLA ARIZONAE SALMONELLA ORANIENBURG SALMONELLA PARATYPHI A SALMONELLA POONA SALMONELLA STANLEY SALMONELLA TYPHI SERRATIA LIQUEFACIENS SERRATIA MARCESCENS SPHINGOMONAS PAUCIMOBILIS STAPHYLOCOCCUS AUREUS STAPHYLOCOCCUS COAGULASE NEGATIVE STAPHYLOCOCCUS EPIDERMIDIS STAPHYLOCOCCUS OTHER NAMED STAPHYLOCOCCUS SP STENOTROPHOMONAS MALTOPHILIA STREPTOCOCCUS ALPHA HAEMOLYTIC (STREPTOCOCCUS VIRIDANS) STREPTOCOCCUS ANGINOSUS (GROUP A) STREPTOCOCCUS BETA HAEMOLYTIC NOT FURTHER SPECIFIED STREPTOCOCCUS BOVIS UNTYPED STREPTOCOCCUS CONSTELLATUS (GROUP A) STREPTOCOCCUS CONSTELLATUS (UNGROUPED) STREPTOCOCCUS GROUP A (STREPTOCOCCUS PYOGENES) STREPTOCOCCUS GROUP B (STREPTOCOCCUS AGALCTIAE) STREPTOCOCCUS GROUP D STREPTOCOCCUS GROUP G (STREPTOCOCCUS CANIS) STREPTOCOCCUS MILLERI GROUP STREPTOCOCCUS MITIS 1 OR I STREPTOCOCCUS MITIS 2 OR II STREPTOCOCCUS MITIS GROUP STREPTOCOCCUS NON-HAEMOLYTIC STREPTOCOCCUS ORALIS STREPTOCOCCUS OTHER NAMED STREPTOCOCCUS PARASANGUINIS STREPTOCOCCUS PNEUMONIAE STREPTOCOCCUS SALIVARIUS STREPTOCOCCUS SANGUINIS GROUP STREPTOCOCCUS SP STREPTOCOCCUS VESTIBULARIS

lab_group

a factor with levels AAAE. COLI AAASTAPHYLOCOCCUS AUREUS ACINETOBACTER COAGULASE NEGATIVE STAPHYLOCOCCUS ENTEROBACTER ENTEROCOCCUS KLEBSIELLA MICROCOCCUS N. MENINGITIDIS NON-PYOGENIC STREPTOCOCCUS other P. AERUGINOSA SALMONELLA STREP A STREP B STREPTOCOCCUS PNEUMONIAE

cath

a logical vector

surg

a logical vector

prem

a numeric vector

cancer

a numeric vector

Gram

a numeric vector

infstatus

a numeric vector

infstatus.1

a numeric vector

Examples

1
2
data(totaldata_sample)
## maybe str(totaldata_sample) ; plot(totaldata_sample) ...

n8thangreen/HESmanip documentation built on March 21, 2020, 12:20 a.m.

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