Files in n8thangreen/LTBIdiagTST
Latent TB infection cost-effectiveness analysis
.Rbuildignore
.gitignore
BUGS/model-prior-prev-separate-igras.txt
BUGS/model-prior-prev.txt
BUGS/model.txt
BUGS/model_prev.txt
BUGS/script-prior-prev-separate-igras.R
BUGS/script-prior-prev.R
BUGS/script.R
BUGS/script_prev.R
DESCRIPTION
LICENSE
LICENSE.md
LTBIdiagTST.Rproj
NAMESPACE
R/activeTB_CE_matrix_by_age.R
R/ce_table2.R
R/create_ltbi_heemod.R
R/create_param_values.R
R/create_state_list.R
R/create_trees.R
R/init_pop_heemod_PSA.R
README.Rmd
README.md
data/ce_scenarios_QFT.csv
data/ce_scenarios_TST.csv
data/ce_scenarios_TST_QFT.csv
data/ce_table.csv
data/cost_inputs.csv
data/decision_tree_output_TST.RData
data/health_inputs.csv
data/init_states.RData
data/jags_output.RData
data/ltbi_heemod.RData
data/params.RData
data/posterior_summary_table.csv
data/probs_inputs.csv
data/res_QFT.RDS
data/res_TSPOT.RDS
data/res_TST+QFT.RDS
data/res_TST+TSPOT.RDS
data/res_TST.RDS
data/run_cedectree_QFT.RDS
data/run_cedectree_QFT.RData
data/run_cedectree_QFT_scenario.RData
data/run_cedectree_TSPOT.RDS
data/run_cedectree_TST+QFT.RData
data/run_cedectree_TST+TSPOT.RData
data/run_cedectree_TST.RDS
data/run_cedectree_TST.RData
data/run_cedectree_TST_QFT.RDS
data/run_cedectree_TST_TSPOT.RDS
data/state_lists.RData
data/tree_dat_QFT.csv
data/tree_dat_QFT_scenario.csv
data/tree_dat_TSPOT.csv
data/tree_dat_TST+QFT.csv
data/tree_dat_TST+TSPOT.csv
data/tree_dat_TST.csv
data/trees.RData
inst/LTBI-screening-model.png
inst/all_decision_trees.xls
inst/docs/TST-decision-tree.Rmd
inst/docs/TST-decision-tree.pdf
inst/docs/TST-decision-tree_forward.Rmd
inst/docs/TST-decision-tree_forward.pdf
inst/docs/heemod-pop-model.Rmd
inst/docs/heemod-pop-model.html
inst/docs/heemod-pop-model.pdf
inst/extdata/scenario_input_values_QFT.csv
inst/extdata/scenario_input_values_QFT.xlsx
inst/extdata/scenario_input_values_TST.csv
inst/extdata/scenario_input_values_TST_QFT.csv
inst/extdata/scenario_input_values_TST_QFT.xlsx
man/costeff_matrix.Rd
man/create_ltbi_heemod.Rd
man/create_param_values.Rd
man/create_trees.Rd
man/heemod_init_pop_PSA.Rd
plots/ceplane_main.png
plots/cepplane_scenario_analysis_QFT.png
plots/cepplane_scenario_analysis_TST_QFT.png
plots/markov-model-counts.png
plots/posterior-densities.png
plots/state_barchart.png
plots/state_radar.png
plots/tornado_plot_QFT.png
plots/tornado_plot_TST.png
plots/tornado_plot_TST_QFT.png
plots/tornado_plot_TST_vs_QFT.png
plots/tornado_plot_TST_vs_TST_QFT.png
raw data/TB_decision-tree-probs.csv
raw data/TB_decision-tree-probs.xlsx
raw data/all_decision_trees.xls - Shortcut.lnk
raw data/lifetable.csv
raw data/pdeath_QoL.csv
raw data/transmat_probs.csv
scripts/QFT.R
scripts/README.html
scripts/README.md
scripts/TSPOT.R
scripts/TST+QFT.R
scripts/TST+QFT_fwd.R
scripts/TST+TSPOT.R
scripts/TST.R
scripts/archive/PSA.R
scripts/archive/SA.R
scripts/archive/heemod-pop-model.R
scripts/archive/sensitivity_analysis_script.R
scripts/main.R
scripts/plotting.R
scripts/same-sample-pathways.R
scripts/scenario_analysis.R
scripts/state-barchart.R
tests/pathway-special-cases.R
tests/testthat.R
