Files in n8thangreen/ltbiScreenLite
ltbiScreenLite
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/activetb_qaly_cost.R
R/asserts.R
R/calc_QALY_tb.R
R/combine_popmod_dectree_res.R
R/costeff_stats.R
R/create_and_save_policies.R
R/create_and_save_scenarios.R
R/decision_tree_cluster.R
R/diroutput.R
R/expected_cost_QALY.R
R/handle_try_error.R
R/interv_constructor.R
R/list_to_BCEA.R
R/make_ce.R
R/make_incremental_ce.R
R/misc.R
R/myToDataFrame_fns.R
R/parallel_decision_tree.R
R/policy_cohort.R
R/policy_interv.R
R/prep_cost-eff_constructors.R
R/rows_first_n_ids.R
R/run_final_message.R
R/run_model.R
R/run_policy.R
R/sample_subset_pop_dectree.R
R/save_session_info.R
R/scenario_QALY.R
R/scenario_QALYloss.R
R/scenario_cost.R
R/screen_discount.R
R/screened_cohort_cost.R
R/set_branch_uniform_params.R
R/setup_folders.R
R/subset_pop_dectree.R
data/051206 - IMPUTED_sample.RData
data/LTBI_dectree-QALY.yaml
data/LTBI_dectree-cost.yaml
data/cost_effectiveness_params.RData
data/global_params.RData
data/intervention_constants.RData
data/model_input_cohort.RData
data/osNode_cost_2009.RData
data/osNode_cost_2009.Rds
data/osNode_health_2009.RData
data/osNode_health_2009.Rds
data/policies-inputs.csv
data/policies.RData
data/policies_ls.RData
data/scenario-parameter-values_1.xlsx
data/scenario_params.RData
data/scenario_params_df.csv
data/synthetic_cohort_params.RData
data/unit_costs.RData
ltbiScreenLite.Rproj
ltbiScreenLite_0.1.0.pdf
man/activetb_qaly_cost.Rd
man/branch_unif_params.Rd
man/calc_QALY_tb.Rd
man/ce_default.Rd
man/combine_popmod_dectree_res.Rd
man/costeff_stats.Rd
man/cp_in_data_to_out_dir.Rd
man/create_and_save_policies.Rd
man/create_and_save_scenarios.Rd
man/decision_tree_cluster.Rd
man/diroutput.Rd
man/expected_cost_QALY.Rd
man/filter_cohort_by_policy.Rd
man/handle_try_error.Rd
man/interv_constructor.Rd
man/list_to_BCEA.Rd
man/make_ce0.Rd
man/make_ce1.Rd
man/make_incremental_ce.Rd
man/mean_QALYs.Rd
man/my_ToDataFrameTable.Rd
man/my_ToDataFrameTypeCol.Rd
man/notif_cost.Rd
man/parallel_decision_tree.Rd
man/rcontact_tracing_costs.Rd
man/rows_first_n_ids.Rd
man/rsample_n_ids.Rd
man/run_final_message.Rd
man/run_model.Rd
man/run_policy.Rd
man/sample_avoid_lg.Rd
man/sample_subset_pop_dectree.Rd
man/save_session_info.Rd
man/scenario_QALY.Rd
man/scenario_QALYloss.Rd
man/scenario_cost.Rd
man/screen_discount.Rd
man/screened_cohort_cost.Rd
man/set_branch_uniform_params.Rd
man/set_policy.Rd
man/setup_folders.Rd
man/subset_pop_dectree.Rd
man/test.Rd
man/total_contact_tracing_cost.Rd
output/data/policies-inputs.csv
output/data/policy_001/ce_res.RData
output/data/policy_001/cohort.RData
output/data/policy_001/dectree_res.RData
output/data/policy_001/e_and_c_totals.RData
output/data/policy_001/folders.RData
output/data/policy_001/intervention_constants.RData
output/data/policy_001/popmod_res.RData
output/data/scenario_params_df.csv
output/messages.Rout
scripts/000-programme-level-params-scenario-runner.R
scripts/data-prep_constants-policy.R
scripts/data-prep_cost-effectiveness.R
scripts/data-prep_modelling.R
scripts/data-prep_scenario.R
scripts/plot-basic-ce-plane.R
scripts/prep-decisiontree.R
session_info.txt
vignettes/pseudo-code.Rmd
vignettes/pseudo-code.html
vignettes/pseudo-code.md
vignettes/pseudo-code.pdf
vignettes/running-full-model.Rmd
vignettes/running-full-model.pdf
