README.md

In nad7wf/FW: Run Finlay-Wilkinson Test

Finlay-Wilkinson Test

This package contains the function fw_test, which runs a Finlay-Wilkinson test to test for GxE. It does this by testing the regression coefficient of (GE \~ Location mean) line against a coefficient of 1.

Installation

You can install FW like so:

devtools::install_github("nad7wf/FW")

Example

library(tidyverse)
library(FW)

set.seed(1)

ge <- matrix(rnorm(405, c(75, 78)), nrow = 27, ncol = 15) %>%
    as.data.frame() %>%
    stats::setNames(paste0("Loc", seq(1, 15))) %>%
    dplyr::mutate(GE = rep(1:9, each = 3),
                  Year = rep(2018:2020, times = 9)) %>%
    dplyr::select(GE, Year, everything())

loc <- plyr::ddply(ge, "Year", function (Year_group) {
    purrr::map_dfr(Year_group[, 3:ncol(Year_group)], mean)
}) %>%
    tidyr::gather(key = "Loc", value = "Loc_mean", -Year) %>%
    dplyr::select(Loc, Year, Loc_mean)

results <- fw_test(ge, loc, 6)

nad7wf/FW documentation built on Sept. 16, 2020, 12:48 a.m.