genes: Androgen stimulation of prostate cancer Cell lines.

In nadiadavidson/goseq: Gene Ontology analyser for RNA-seq and other length biased data

Description

This data set gives the RNA-seq data from an experiment measuring the effects of androgen stimulation on prostate cancer. Information is given about all (ENSEMBL) genes for which there was at least one mapping read in either the treated or untreated RNA-seq experiment. The edgeR package was used to determine which genes were differentially expressed. The details of the analysis can be found in the goseq vignette.

Usage

data(genes)

Format

A named vector of ENSEMBL genes, with 1 representing differential expression.

Source

Determination of tag density required for digital transcriptome analysis: application to an androgen-sensitive prostate cancer model, 2008, Li et. al.

References

Li, H., Lovci, M. T., Kwon, Y. S., Rosenfeld, M. G., Fu, X. D., Yeo, G. W. (2008) Determination of tag density required for digital transcriptome analysis: application to an androgen-sensitive prostate cancer model Proceedings of the National Academy of Sciences of the United States of America Date: Dec 23 Vol: 105 Issue: 51 Pages: 20179-84

Examples

data(genes)
head(genes)

nadiadavidson/goseq documentation built on Oct. 28, 2019, 10:27 a.m.