ggbounds: Plots differentiation statistics along with the maximal and...

In nalcala/PopGenBounds: Bounds on population-genetic statistics

Plots differentiation statistics along with the maximal and minimal values of the statistic

Description

Plots differentiation statistics along with the maximal and minimal values of the statistic

Usage

ggbounds(M, FST, GpST = NULL, D = NULL, K = 2)

Arguments

M	Numerical vector of frequency of the most frequent allele for each locus
FST	Numerical vector of FST values for each locus
GpST	Numerical vector of G prime ST values for each locus
D	Numerical vector of D values for each locus
K	Number of subpopulations

Value

A ggplot object

Examples

library(tidyverse)
freqs_locus1 <- matrix(c(1,0.5,0,0.5),nrow=2)
freqs_locus2 <- matrix(c(1,0.8,0,0.2),nrow=2)
freqs_locus3 <- matrix(c(1,0.2,0,0.8),nrow=2)
data  <- rbind(Diff(freqs_locus1),Diff(freqs_locus2),Diff(freqs_locus2))
ggbounds(M=data %>% filter(statistic=="M") %>% pull(value),FST=data %>% filter(statistic=="FST") %>% pull(value))

nalcala/PopGenBounds documentation built on Jan. 23, 2025, 7:22 p.m.