Man pages for naomiwilson/gecko
Naive Bayes Classifier for scoring human microbiomes
| acquire_parameters | General Acquire Parameters Function |
| calculate_probability | Calculate P(B) |
| estimate_binomial_parameter | Estimate Binomial Parameter |
| getBestThresholds | Grab best thresholds per feature from ROC curve |
| getFeatureAUCs | Get feature AUCs using pROC |
| getMapEstimates | Maximum a posteriori estimation |
| get_modeled_features | Get list of features included in model |
| LogLoss | Log Loss as defined on kaggle forum |
| make_confusion_matrix | Make Confusion Matrix of Results |
| make_overlapping_score_histogram | Make Histogram of sample scores with both classes overlapping |
| make_sample_score_histograms | Histograms of sample scores by class (makes 3 plots) |
| perform_NBC | Use trained model to predict on data |
| p_giv_class | Calculate P(X|Y) function |
| PlotAllROCByFeature | Plot a feature ROC Curve |
| prior | Gaussian prior function for MAP estimation |
| train_NBC | NBC Training Function |
