make_sample_score_histograms: Histograms of sample scores by class (makes 3 plots)

In naomiwilson/gecko: Naive Bayes Classifier for scoring human microbiomes

Histograms of sample scores by class (makes 3 plots)

Description

Histograms of sample scores by class (makes 3 plots)

Usage

make_sample_score_histograms(
  scores.df,
  donor0 = "MARS0022.F.16s",
  donor1 = "MARS0043.F.16s",
  title0 = "Healthy (59) Sample Scores",
  title1 = "Asthmatic (36) Sample Scores",
  class1.color = "#DE4968FF",
  class0.color = "#51127CFF",
  both.color = "lightblue",
  x.label = "Sample Score",
  numbins = 10
)

Arguments

scores.df	dataframe with column named "score" containing numeric score values and "class" column containing class names per sample by row
donor0	control class donor sample name (e.g. healthyPatient32)
donor1	case class donor sample name (e.g. asthmaPatient19)
title0	title for control plot
title1	title for case plot
class1.color	hex value, or R color name
class0.color	hex value, or R color name
both.color	hex value, or R color name
x.label	x-axis label
numbins	breaks for hist

Value

3 plots inline

naomiwilson/gecko documentation built on March 1, 2023, 12:49 p.m.