README.md

In nasqar/SeuratWizard: User Interface to Seurat (Single Cell) in R Shiny

This version is no longer supported. See SeuratV3Wizard for the new version

SeuratWizard: R Shiny interface for Seurat single-cell analysis library

Online/Demo:

You can try it online at http://nasqar.abudhabi.nyu.edu/SeuratWizard

Run using docker (Recommended):

docker run -p 80:80 aymanm/seuratwizard

This will run on port 80

Local Install:

devtools::install_github("nasqar/SeuratWizard")

Run:

library(SeuratWizard)
SeuratWizard()

This will run on http://0.0.0.0:1234/ by default

To run on specific ip/port:

ip = '127.0.0.1'
portNumber = 5555
SeuratWizard(ip,portNumber)

This will run on http://127.0.0.1:5555/

Screenshots:

Acknowledgements:

1) Rahul Satija, Andrew Butler and Paul Hoffman (2017). Seurat: Tools for Single Cell Genomics. R package version 2.2.1. https://CRAN.R-project.org/package=Seurat

2) Satija Lab

nasqar/SeuratWizard documentation built on Sept. 24, 2019, 2:02 p.m.