Description Usage Arguments Details Value See Also
View source: R/xcmsIntegrate.R
warpgroupsToXs
returns an xcmsSet with the original groups and peaks replaced by those described in groups
.
1 | warpgroupsToXs(xs, groups, xr.l, ppm.padding = 0.1, min.ppm.width = 0)
|
xs |
An xcmsSet object. |
groups |
The list of warpgroups as output by |
xr.l |
A list contanining xcmsRaw objects for each sample in the xcmsSet object in order. |
ppm.padding |
Float. An expansion of the mass window for integration. |
min.ppm.width |
Float. Any mass windows narrower than this are expanded to this width. |
This function simply iterates over each group, integrates the appropriate region from xr.l and packages the results as an xcmsSet.
An xcmsSet with groups and peaks replaced by warpgroup generated ones.
See https://github.com/nathaniel-mahieu/warpgroup for examples.
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