NEWS.md

In natverse/nat.h5reg: Neuroanatomy Toolbox Support for Saalfeld/Bogovic HDF5 Registration Format

nat.h5reg 0.4.3

• fix h5 registrations on MacOS ARM machines (#10)
• set up github actions (check, coverage, pkgdown)

nat.h5reg 0.4.2

• try to provide more information about java errors in saalfeld_xform()

nat.h5reg 0.4.1

• dr_h5reg() to check java and h5reg installation
• substantial speed-up in transforming neuronlist objects with xformpoints.h5reg() by memoising the default level check for h5reg objects (17148d5219ff1b1b99ab1dfb4f793eede175cf39).

nat.h5reg 0.4.0

• Faster transforms by using rJava when available (#6)
• Don't warn when using a default registration level (#8)
• fix saalfeld_xform fails with NA points in inputs (#7)

nat.h5reg 0.3.2

• add package overview documentation
• switch to natverse github organisation

nat.h5reg 0.3.1

• Make hdf5r package an essential dependency (i.e. Import) because we need to look inside h5 files to run the transforms (#5)
• quote all paths to java command line tool (in case e.g. path to transform file has a space in it) (#4)
• update to v0.0.1 release of java command line tool. This changes the behaviour of out of range points to affine + nearest non-rigid displacement (see https://github.com/saalfeldlab/transform-helpers/issues/3)
• depend on R >= 3.5.0 for rds test files

nat.h5reg 0.3.0

• fix a bug in inverse transforms by upgrading transform helper jar file
• export is.h5reg() and read.h5reg.info()
• add some tests and simple test h5 files

nat.h5reg 0.2.0

• First public version
• Fully functional transforms using sample h5 format transforms from Stephan Saalfeld.

natverse/nat.h5reg documentation built on Nov. 20, 2023, 7:52 a.m.