neuronbridge_info: Get information on neurons and lines used by NeuronBridge

In natverse/neuronbridger: R client utilities for interacting with the NeuronBridge matching service

Get information on neurons and lines used by NeuronBridge

Description

This function gets information stored on NeuronBridge for *D. melanogaster* neurons and genetic driver lines that have been used in EM-LM searches.

Usage

neuronbridge_info(
  id,
  dataset = c("detect", "by_line", "by_body"),
  version = "v2_1_1",
  ...
)

Arguments

id	character vector. An identifier/identifiers for the neuron(s)/line(s) you wish to search. This can either be a line code for a GAL4 line (e.g. R16F12) or a split GAL4 line (e.g. LH173) or a 'body ID' for a neuron from the hemibrain connectome, (e.g. 1537331894).
dataset	whether the ID given is a body ID ("by_body") from the hemibrain connectome or a genetic driver line ("by_line"). If left at "detect" then neuronbridger tries to guess to which id belongs by using neuronbridger:::guess_dataset.
version	the precomputed scores to search. For example, "v2_1_1" refers to this release.
...	methods passed to neuronbridger:::neuronbridge_fetch.

Value

a data.frame where each row corresponds to a MIP file that has been used to compute matching scores. Each relates to the id you gave in the function call, but each also has its own unique nb.id.

• "publishedName" - the id you gave in the function call.

• "libraryName" - the data set from which this data item came.

• "imageURL" - the path on https://s3.amazonaws.com/, at which one can find a 'high res' .png of the MIP file for this data item.

• "thumbnailURL" - the path on https://s3.amazonaws.com/, at which one can find a 'low res' .jpg thumbnail of the MIP file for this data item.

• "gender" - the sex of the fly brain which this data item derives

• "nb.id" - the 'NeuronBridge ID' for the MIP file.

• "no.images" - the total number of MIP files (each with its own nb.id) that related to the id for which you searched.

See Also

neuronbridge_hits, neuronbridge_line_contents, neuronbridge_mip

Examples

## Not run: 
# Get information on a mushroombody related GMR GAL4 driver line
nb.info.lm = neuronbridge_info("MB543B")

# Get information on the hemibrain neuron,
nb.info.em = neuronbridge_info("542634818")

## End(Not run)

natverse/neuronbridger documentation built on Nov. 12, 2023, 11:21 a.m.