get_target_size: Compute total number of loci covered in a BED file

In ncasiraghi/rpabemus: Adaptive Base Error Model in Ultra-Deep Sequencing Data

Compute total number of loci covered in a BED file

Description

Compute total number of loci covered in a BED file

Usage

get_target_size(targetbed, Mbp = TRUE)

Arguments

targetbed	Genomic regions in the BED tab-delimited format.
Mbp	Return count as Mbp. default: TRUE

Value

Mbp covered in the targetbed

Examples

targetbed <- system.file("extdata", "regions_toy.bed", package = "abemus")
target_size <- get_target_size(targetbed=targetbed, Mbp = TRUE)

ncasiraghi/rpabemus documentation built on Nov. 1, 2022, 9:17 p.m.