Man pages for ndbrown6/EMseq
Enzymatic Methylation sequencing
| betaABfromMeanKappa | Beta parameters from mean and concentration |
| betaABfromMeanSD | Beta parameters from mean and standard deviation |
| betaABfromModeKappa | Beta parameters from mode and concentration |
| consensusBaseatCpG | Computes the consensus for paired-end sequences where the two... |
| decodeBaseatCpG | Transforms the consensus sequence data frame into binary |
| EMseq | Enzymatic Methylation sequencing |
| gammaShRaFromMeanSD | Gamma parameters from mean and standard deviation |
| gammaShRaFromModeSD | Gamma parameters from mode and standard deviation |
| HDIofMCMC | Highest Density Interval |
| LL | Likelihood of cfDNA read being tumor or nomal derived |
| nucleotideAlignmentatCpG | Returns the sequence of nucleotides and base qualities along... |
| readAlignmentatCpGIsland | Reads a sequence alignment from a BAM file at the given... |
