Files in ndbrown6/MSK-GRAIL-TECHVAL

High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants

R/0_exec_01_assay_reproducibility.R R/0_exec_02_concordance_analysis.R R/0_exec_03_clinical_vignette.R R/0_exec_04_chip_mutation_cfdna.R R/0_exec_05_chip_mutation_wbc.R R/0_exec_config.R R/0_exec_s02_comparison_sequencing_depth.R R/0_exec_s03_grail_noise_model.R R/0_exec_s04_reproducibility_scatter.R R/0_exec_s05_barplot_recurrent.R R/0_exec_s06_96base_substitutions.R R/0_exec_s07_msiscore_barplot.R R/0_exec_s08_vaf_scatterplot_cfdna_wbc.R R/0_exec_s09_mutation_heatmap_wbc.R R/0_exec_s10_compare_copynumber.R R/0_exec_s12_copynumber_controls.R R/0_exec_s14_high_depth_mutations.R R/0_exec_s15_high_depth_mutations_hypermutators.R R/absolute.R R/break_distribution.R R/ci_binom.R R/compute_bh.R R/compute_entropy.R R/corr_plot.R R/delta_germ.R R/fun_lodmdl.R R/fun_zerob.R R/gene_ranges.R R/get_target_lengths.R R/in_common_bed.R R/incorrect_bh.R R/jensen_shannon.R R/label_bio_source.R R/label_wbc_variants.R R/log10_axis.R R/m0_oncodrive.R R/make_id_x.R R/make_id_y.R R/order_samples.R R/parse_msi_distribution.R R/ploidy.R R/plot_96_spectrum.R R/plot_log2.R R/process_one_marker.R R/prune.R R/split_column_by_overlap.R R/transparent_rgb.R R/update_filter.R R/zzz.R README.md man/absolute.Rd man/break_distribution.Rd man/ci_binom.Rd man/compute_bh.Rd man/compute_entropy.Rd man/corr_plot.Rd man/delta_germ.Rd man/fun_lodmdl.Rd man/fun_zerob.Rd man/gene_ranges.Rd man/get_target_lengths.Rd man/in_common_bed.Rd man/incorrect_bh.Rd man/jensen_shannon.Rd man/label_bio_source.Rd man/label_wbc_variants.Rd man/log10_axis.Rd man/m0_oncodrive.Rd man/make_id_x.Rd man/make_id_y.Rd man/order_samples.Rd man/parse_msi_distribution.Rd man/ploidy.Rd man/plot_96_spectrum.Rd man/plot_log2.Rd man/process_one_marker.Rd man/prune.Rd man/split_column_by_overlap.Rd man/transparent_rgb.Rd man/update_filter.Rd