In ndcn/omicser: NDCN Omics Browser

Instructions

1. Load the database

• In the Ingest tab - choose database
• choose the data columns to browse
• CLICK Load Data

2. Consider the Context

• spend a minute reading the Database Information curated along with the database which renders on the right
• read the Welcome tab message

3. Select variables for visualization

• Using the selector on the left sidebar you can choose what variables and measures you would like to visualize.
• e.g. choosing a bunch of "target" *-omic features
• CLICK Plot Now! to activate the selections in the playground

4. Play and Explore

• There are a variety of plots in the Playground
• Expression tab
  • heatmaps for visualizing the expression measures for chosen features
• Diff. Expr. tab
  • volcano plots of differential expression
  • interactive auxuillary distributions and meta
• Table tab
  • browse -omic features via a data-table
• Data Table tab

• allows for browsing the details of the data

• Help tab (WIP)

• links to documentation, github repo, and more

© 2021 DataTecnica, Inc., CZI, NDCN,

ndcn/omicser documentation built on July 20, 2022, 6:29 p.m.