valid_corn_cob_analysis: run_corn_cob_analysis Function Runs CornCob differential...
In nearinj/Healthy_Oral_Microbiome: Analysis for Healthy Oral Microbiome Atlantic PATH Cohort
Description
Usage
Arguments
Value
View source: R/Analysis_Functions.R
Description
run_corn_cob_analysis Function
Runs CornCob differential abundance analysis on the input feature and phyloseq object while removing samples that have NA data for each feature.
Automatically runs DA of the feature while controlling for DNA extraction round and differiental variablility
Usage
1
valid_corn_cob_analysis(feature, df, taxa_tab)
Arguments
feature
Feature to be tested
phylo
The phyloseq object that contains the metadata and ASV table to be tested.
Value
Returns a list containing the DA results from Corncob
nearinj/Healthy_Oral_Microbiome documentation built on April 3, 2020, 12:58 a.m.
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Description Usage Arguments Value
View source: R/Analysis_Functions.R
Description
run_corn_cob_analysis Function Runs CornCob differential abundance analysis on the input feature and phyloseq object while removing samples that have NA data for each feature. Automatically runs DA of the feature while controlling for DNA extraction round and differiental variablility
Usage
1 | valid_corn_cob_analysis(feature, df, taxa_tab)
|
Arguments
feature |
Feature to be tested |
phylo |
The phyloseq object that contains the metadata and ASV table to be tested. |
Value
Returns a list containing the DA results from Corncob
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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