Files in nearinj/Nearing_et_al_2020_Oral_Microbiome
Analysis for Healthy Oral Microbiome Atlantic PATH Cohort
DESCRIPTION
Meta/vignette.rds
NAMESPACE
R/Analysis_Functions.R
README.md
doc/Alpha_Diversity_Analysis.R
doc/Alpha_Diversity_Analysis.Rmd
doc/Alpha_Diversity_Analysis.html
doc/Beta_Diversity_Analysis.R
doc/Beta_Diversity_Analysis.Rmd
doc/Beta_Diversity_Analysis.html
doc/Beta_Diversity_Validation.R
doc/Beta_Diversity_Validation.Rmd
doc/Beta_Diversity_Validation.html
doc/Core_Microbiome.R
doc/Core_Microbiome.Rmd
doc/Core_Microbiome.html
doc/Corncob_DA_Analysis.R
doc/Corncob_DA_Analysis.Rmd
doc/Corncob_DA_Analysis.html
doc/Corncob_DA_Validation_Analysis.R
doc/Corncob_DA_Validation_Analysis.Rmd
doc/Corncob_DA_Validation_Analysis.html
man/Filt_samples.Rd
man/get_alpha_divs.Rd
man/get_beta_div.Rd
man/get_core_features.Rd
man/remove_rare_features.Rd
man/run_alpha_compare.Rd
man/run_corn_cob_analysis.Rd
man/valid_corn_cob_analysis.Rd
vignettes/Alpha_Diversity_Analysis.Rmd
vignettes/Beta_Diversity_Analysis.Rmd
vignettes/Beta_Diversity_Validation.Rmd
vignettes/Core_Microbiome.Rmd
vignettes/Corncob_DA_Analysis.Rmd
vignettes/Corncob_DA_Validation_Analysis.Rmd
vignettes/Machine_Learning_RF.Rmd
vignettes/Picrust2_MetaCyc_Pathway_Analysis.Rmd
vignettes/Picrust2_Pathway_Pred_valid.Rmd
vignettes/RDA_deblur_final.Rmd
