remove_rare_features: remove_rare_features function

In nearinj/Nearing_et_al_2020_Oral_Microbiome: Analysis for Healthy Oral Microbiome Atlantic PATH Cohort

Description

This function takes in a feature table and removes features that are found in less than the specififed cutoff

Usage

remove_rare_features(table, cutoff_pro = 0.1, parallel = 1)

Arguments

table	The feature table that needs to be filtered
cutoff_pro	The cutoff proportion used to identify rare features. Defaults to 0.1
parrellel	The number of threads used to perform filtering. Defaults to 1.

Value

Returns the filtered feature table

nearinj/Nearing_et_al_2020_Oral_Microbiome documentation built on Sept. 6, 2020, 8:25 p.m.