RPprep: RPprep

In neural-stem-cell-institute/screp: A Package for Enrichment Testing and Visualization of Single Cell RNA-Seq Clusters

RPprep

Description

function to prepare the Reactome Pathway file downloaded from the ReactomeDB for downstream use.

Usage

RPprep(RP, species_x = "Homo")

Arguments

RP	file downloaded from the reactome database or the provided annotation file. If using a a file from the reactome database some NAs will likely result and need to be addressed before continuing. A corrected RP file for Humans is included in the package.
species_x	genus of target species. Default is "Homo" (human)

Value

returns a data frame suitable for use in reactome_prep function

Examples

## Not run: 
RP<-RPprep(RP,"Homo sapiens")

## End(Not run)

neural-stem-cell-institute/screp documentation built on Feb. 11, 2023, 10:45 a.m.