The goal of MNITemplate is to provide the MNI Template of T1-weighted MRI imaging from http://www.bic.mni.mcgill.ca/ServicesAtlases/ICBM152NLin2009. In addition to the standard template, the image has been segmented into gray matter, white matter, and cerebrospinal fluid (’CSF’) using the ‘FAST’ algorithm from ‘FSL’ https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FAST..
Creator: Jean-Philippe Fortin, jeanphi@mail.med.upenn.edu
Authors: Jean-Philippe Fortin, John Muschelli, Russell T. Shinohara
| Resource: | Travis CI | | ----------- | ---------------------------------------------------------------------------------------------------------------------------------------------------- | | Platform: | Linux | | R CMD check | |
The MNI152 template that is included with FSL: https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/Atlases
library(MNITemplate)
readMNI("T1")
| File | Description | Reader |
| ---------------------------------------- | ------------------------------------------------------- | ---------------------------------- |
| MNI152_TI_1mm.nii.gz | T1-w MNI Template, 1mm | readMNI("T1")
|
| MNI152_TI_1mm_Brain.nii.gz | T1-w MNI Template, 1mm, skull stripped | readMNI("Brain")
|
| MNI152_TI_1mm_Brain_Mask.nii.gz | T1-w MNI Template, 1mm, brain mask | readMNI("Brain_Mask")
|
| MNI152_TI_2mm.nii.gz | T1-w MNI Template, 2mm | readMNI("T1", res="2mm")
|
| MNI152_TI_2mm_Brain.nii.gz | T1-w MNI Template, 2mm, skull stripped | readMNI("Brain", res="2mm")
|
| MNI152_TI_2mm_Brain_Mask.nii.gz | T1-w MNI Template, 2mm, brain mask | readMNI("Brain_Mask", res="2mm")
|
| Tissue Segmentation: | | |
| MNI152_TI_1mm_Brain_FAST_seg.nii.gz | FSL FAST tissue classes (1=CSF, 2=GM, 3=WM) for 1mm res | readMNISeg()
|
| MNI152_TI_2mm_Brain_FAST_seg.nii.gz | FSL FAST tissue classes (1=CSF, 2=GM, 3=WM) for 2mm res | readMNISeg(res="2mm")
|
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