#' @rdname trac_manual
#' @title Tract Reconstruction for Each Step
#' @description Reconstruction from Freesurfer for Preprocessing,
#' Bedpost, and Path reconstruction
#'
#' @param infile Input filename (dcm or nii)
#' @param outdir Output directory
#' @param subjid subject id
#' @param verbose print diagnostic messages
#'
#' @return Result of \code{\link{system}}
#' @export
trac_prep <- function(
infile,
outdir = NULL,
subjid,
verbose = TRUE
) {
reconner(infile = infile,
outdir = outdir,
subjid = subjid,
verbose = verbose,
opts = "-prep")
}
#' @rdname trac_manual
#' @export
trac_bedpost <- function(
infile,
outdir = NULL,
subjid,
verbose = TRUE
) {
reconner(infile = infile,
outdir = outdir,
subjid = subjid,
verbose = verbose,
opts = "-bedp")
}
#' @rdname trac_manual
#' @export
trac_path <- function(
infile,
outdir = NULL,
subjid,
verbose = TRUE
) {
reconner(infile = infile,
outdir = outdir,
subjid = subjid,
verbose = verbose,
opts = "-path")
}
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