Description Usage Arguments Value
This function calls fnirt
to register infile to reffile
and either saves the image or returns an object of class nifti, but does
the affine registration first
1 2 3 4 5 6 7 8 9 10 11 12 13 14 |
infile |
(character) input filename |
reffile |
(character) reference image to be registered to |
flirt.omat |
(character) Filename of output affine matrix |
flirt.outfile |
(character) Filename of output affine-registered image |
outfile |
(character) output filename |
retimg |
(logical) return image of class nifti |
reorient |
(logical) If retimg, should file be reoriented when read in?
Passed to |
intern |
(logical) pass to |
flirt.opts |
(character) additional options to FLIRT |
opts |
(character) additional options to FNIRT |
verbose |
(logical) print out command before running |
... |
additional arguments passed to |
character or logical depending on intern
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