quantifySNPs: Simple quantifySNPs function.
In neuroconductor-devel/ANTsR: ANTs in R: Quantification Tools for Biomedical Images
Description
Usage
Arguments
Value
Author(s)
Examples
Description
quantifySNPs converts trinary snps to frequency data
Usage
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quantifySNPs(
snps,
freqthresh = 0.1,
shiftit = FALSE,
replaceWithF = TRUE,
traitvecin = NA,
trainvec = NA
)
Arguments
snps
input matrix
freqthresh
remove snps below this frequency
shiftit
shift the snps to smooth the estimate
replaceWithF
replaces snps with frequency values
traitvecin
map snps to trait vector
trainvec
defines training data
Value
matrix is output
Author(s)
Avants BB
Examples
1
2
mat <- matrix(c(0,1,2,0,0,1,2,2,2),ncol=3)
wmat<-quantifySNPs( mat , freqthresh=0)
neuroconductor-devel/ANTsR documentation built on April 1, 2021, 1:02 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
quantifySNPs converts trinary snps to frequency data
Usage
1 2 3 4 5 6 7 8 | quantifySNPs(
snps,
freqthresh = 0.1,
shiftit = FALSE,
replaceWithF = TRUE,
traitvecin = NA,
trainvec = NA
)
|
Arguments
snps |
input matrix |
freqthresh |
remove snps below this frequency |
shiftit |
shift the snps to smooth the estimate |
replaceWithF |
replaces snps with frequency values |
traitvecin |
map snps to trait vector |
trainvec |
defines training data |
Value
matrix is output
Author(s)
Avants BB
Examples
1 2 | mat <- matrix(c(0,1,2,0,0,1,2,2,2),ncol=3)
wmat<-quantifySNPs( mat , freqthresh=0)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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