maskIntersect: Intersection of a list of brain masks

In neuroconductor-devel/RAVEL: Removal of Artificial Voxel Effect by Linear Regression

Description

Intersection of a list of brain masks.

Usage

maskIntersect(
  list,
  output.file = NULL,
  prob = 1,
  reorient = FALSE,
  returnObject = TRUE,
  writeToDisk = TRUE,
  verbose = TRUE
)

Arguments

list	List of the mask input files (nifti files) or mask nifti objects.
output.file	Optional filename for the output image.
prob	Probability of intersection. Ex: 0.9 will return a mask for voxels that intersect 90% of the time.
reorient	Should the input images be reoriented? FALSE by default.
returnObject	Should a nifti object be returned?
writeToDisk	Should the intersection mask be saved to the disk?
verbose	Should messages be printed?

Value

If returnObject is TRUE, a nifti object is returned, and if writeToDisk is TRUE, the intersection mask is saved to disk as a NIfTI file.

Author(s)

Jean-Philippe Fortin

Examples

if (require(EveTemplate)){
  path1 <- path2 <- getEvePath()
  inter <- maskIntersect(list(path1,path2), writeToDisk=FALSE)
}

neuroconductor-devel/RAVEL documentation built on April 1, 2021, 4:39 a.m.