construct_subj_dir: Construct Subject Directory

In neuroconductor-devel/freesurfer: Wrapper Functions for 'Freesurfer'

Description

This function copies files specified by the types of data, determined by the folder Freesurfer put them in, into a temporary directory for easier separation of data and different structuring of data.

Usage

construct_subj_dir(
  label = NULL,
  mri = NULL,
  stats = NULL,
  surf = NULL,
  touch = NULL,
  subj = NULL,
  subj_root_dir = tempdir()
)

Arguments

label	Files to copy to subj_root_dir/subj/label folder
mri	Files to copy to subj_root_dir/subj/mri folder
stats	Files to copy to subj_root_dir/subj/stats folder
surf	Files to copy to subj_root_dir/subj/surf folder
touch	Files to copy to subj_root_dir/subj/touch folder
subj	Name of subject to make folder for to use for Freesurfer functions. If NULL, a temporary id will be generated
subj_root_dir	Directory to put folder with contents of subj

Value

List with the subject name, the SUBJECTS_DIR to use (the directory that contains the subject name), and the types of objects copied

Examples

## Not run: 
library(freesurfer)
label = "/Applications/freesurfer/subjects/bert/label/aparc.annot.a2009s.ctab"
mri = c(
  "/Applications/freesurfer/subjects/bert/mri/aparc.a2009s+aseg.mgz",
  "/Applications/freesurfer/subjects/bert/mri/aseg.auto.mgz")
stats = c("/Applications/freesurfer/subjects/bert/stats/lh.aparc.stats",
          "/Applications/freesurfer/subjects/bert/stats/aseg.stats")
surf = "/Applications/freesurfer/subjects/bert/surf/lh.thickness"
touch = NULL

## End(Not run)

neuroconductor-devel/freesurfer documentation built on April 1, 2021, 1:07 p.m.